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Revisions №60536

branch: master 「№60536」
Commited by: Jack Maguire
GitHub commit link: 「f8da1c1ea855e3f5」 「№3659」
Difference from previous tested commit:  code diff
Commit date: 2018-12-12 16:14:16
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tutorials integration.ubsan integration performance profile release.PyRosetta4.Debug release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release ubuntu.clang.python35.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release unit.ubsan

Merge pull request #3659 from RosettaCommons/JackMaguire/HBondState_part1 This PR is just the result of a bunch of sed commands to change AtomLevelHBondGraph to HBondGraph and MCHBNetInteractionGraph to HBondGraphInitializerIG (now that it's used in more than just MC HBNet). I also sprinkled in a few make_shared's but there's nothing exciting. Thanks to Andy for the review!

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
polyaramid_test_trivial
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
advanced_protein-protein_docking
Test: mac.clang.integration

Failed sub-tests (click for more details):
hotspot_hashing
Test: linux.clang.performance

Failed sub-tests (click for more details):
protocols_ligand_docking_LigandDockProtocol
Test: ubuntu.clang.python35.release.PyRosetta4.Release

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Test: ubuntu.clang.python37.release.PyRosetta4.Release

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Test: ubuntu.gcc.unit.ubsan

Failed sub-tests (click for more details):
basic:DatabaseResourceLocatorTests:test_DatabaseResourceLocator_query_sqlite_database core:AtomTypeDatabaseIOTests:test_atom_type_set_name core:MHCEpitopeEnergySetupTests_initialization:test_mhc_init_database core:MHCEpitopeEnergySetupTests_initialization:test_mhc_init_matrix core:MHCEpitopeEnergySetupTests_initialization:test_mhc_xformed_raw core:MHCEpitopeEnergySetupTests_initialization:test_mhc_xformed_relative_additive core:MHCEpitopeEnergySetupTests_initialization:test_mhc_xformed_relative_multiplicative core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MHCEpitopePredictorExternalTests:test_mhc_predictor_external protocols:AntibodyDatabase:test_cdr_loading protocols:AntibodySeqDesign:test_graft_tf_generation1 protocols:AntibodySeqDesign:test_graft_tf_generation2 protocols:AntibodySeqDesign:test_normal_tf_generation protocols:AntibodySeqDesign:test_task_ops protocols:AntibodySeqDesign:test_utility_functions protocols:AntibodyTaskOps:test_AddCDRProfileSetsOperation protocols:AntibodyTaskOps:test_AddCDRProfilesOperation protocols:AntibodyTaskOps:test_DisableAntibodyRegionOperation protocols:AntibodyTaskOps:test_DisableCDRsOperation protocols:AntibodyTaskOps:test_RestrictToCDRsAndNeighbors protocols:ClusterTests:test_cluster_identification protocols:ClusterTests:test_features protocols:ConservativeDesignOperationTests:test_task_op protocols:FeaturesReporterTests:test_identifier_generation protocols:FeaturesReporterTests:test_main protocols:FeaturesReporterTests:test_trajectory_report_to_db protocols:InterfaceFeaturesTests:test_reporter protocols:ProteinSilentReportTests:test_main protocols:QueryDatabaseTests:test_pair_query protocols:QueryDatabaseTests:test_single_query protocols:RRReporterSQLiteTests:test_RRReporterSQLite_features protocols:RRReporterSQLiteTests:test_RRReporterSQLite_full protocols:ResidueProbDesignOperationTests:test_task_op protocols:SandwichFeaturesTests:test_main protocols:SewingHasherTests:test_5_ss_model_generation_from_db protocols:SewingHasherTests:test_key_generation protocols:SewingHasherTests:test_scoring protocols:SewingHasherTests:test_serialization protocols:SewingHasherTests:test_transform_coords utility:DatabaseSessionManagerTests:test_db_session