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Revisions №60406

branch: master 「№60406」
Commited by: Rocco Moretti
GitHub commit link: 「5d59f4fc160acaee」 「№3427」
Difference from previous tested commit:  code diff
Commit date: 2018-09-17 19:01:09
linux.clang linux.gcc linux.srlz mac.clang
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release

Merge pull request #3427 from RosettaCommons/roccomoretti/parse_resnum_RID Use ResidueIndexDescriptions to remove Pose useage in parse_my_tags() This updates a number of diverse classes which did (Pose-dependent) residue number parsing in parse_my_tag(). Now they create and store ResidueIndexDescriptions instead, deferring the pose-dependent parsing until apply time. This updates ResidueIndexDescription for output and serialization, and adds a few new ResidueIndexDescriptor subclasses, such as "end of chain" and "last residue in pose". It also makes a pose-free version of parse_resnum() which returns a ResidueIndexDescription. The bulk is the conversion of various Movers & Filters to use ResidueIndexDescriptions versus in-parse_my_tag pose use. As an added benefit, certain classes which used to take only Pose-numbered parameters can now also take PDB numbered parameters. I shouldn't have changed any existing functionality.