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Revisions №60405

branch: master 「№60405」
Commited by: Rocco Moretti
GitHub commit link: 「575629d6c9d3ca7a」 「№3483」
Difference from previous tested commit:  code diff
Commit date: 2018-09-17 18:55:18
linux.clang linux.gcc linux.srlz mac.clang
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release

Merge pull request #3483 from RosettaCommons/roccomoretti/seq_rec_metric Add a simple metric which can calculate sequence recovery. There's several options for how to calculate the sequence recovery. * Standard sequence recovery, which is calculated from a subset of residues, comparing their seqeunce with that of a specified reference structures (potentially a "native") * PSSM recovery - This is a pass/fail based approach from DeLuca et al 2011 - Basically, everything with a positive PSSM score is counted as "not a mutation" (No reference structure needed.) * Average PSSM score for designed residues. (No reference structure needed). * Delta PSSM score for designed residues (Uses reference structure.)