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Revisions №60357

branch: master 「№60357」
Commited by: Rocco Moretti
GitHub commit link: 「d7ca38d07878661a」 「№3405」
Difference from previous tested commit:  code diff
Commit date: 2018-08-17 11:04:59
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.PyRosetta.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL build.header build.levels ninja graphics static mac.clang.static.build.release linux.ui mac.ui beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tutorials integration.ubsan integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug mac.clang.python27.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.MinSizeRel mac.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python35.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release

Merge pull request #3405 from RosettaCommons/roccomoretti/IG_size_debug Switch interaction graph size output to debug tracer level. There's little a non-expert user can do with the raw size value. Make it available with a debug-level tracer, but put a more user-actionable message for high IG memory usage. (Set arbitrarily at 25 MB)

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
threefold_symm_peptide_design
Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AnchoredDesign Enzrevert_xml FloppyTail InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerSelector LoopAnalyzer ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_graft antibody_numbering_converter assemble_domains_jd2 autosetup_metals_centroid backrub backrub_pilot batch_relax beta_strand_homodimer binselector binselector_probins broker_membrane buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans ccd_ends_graft_mover_rs classic_relax_1a19 cluster_alns create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline d_workflow dcys_disulfidize density_denovo density_refine density_refine_symm distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal entropy_correction enumerative_sampling enzdes farnesyl fast_relax favor_native_residue fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_from_loops fuzzy ga_ligand_dock gen_lig_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench hbonds hbonds_sp2 hbs_design helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump inv_kin_lig_loop_design inverse_rotamer_remodel jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_symmdef_file membrane_relax membrane_relax_hbond metal_setup metalloprotein_abrelax mf_fixbb_des mf_fixbb_sc mf_flexbb_sc min_pack_min mirror_symm motif_dna_packer_design mp_dock mp_dock_prepack mp_domain_assembly mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_span_ang_ref2015_memb mp_symdock mp_vis_emb mpi_multistate_design mr_protocols msd_mover multistage_rosetta_scripts mutate ncaa_fixbb netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities oligourea_design oligourea_predict oop_design oop_dock_design orbitals pH_mode pepspec pepspec_anchor_dock phiselector phosphonate place_simultaneously pna pocket_relax posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk pymol_cif range_relax_w_cst readin_dna_rna_protein relax_w_allatom_cst remodel remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb resource_database_locator rna_denovo_dna_bridge rna_design rna_motif rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_2 rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves scaffold_matcher score12_docking score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI sequence_tolerance simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter stored_residue_subset swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge swm_protein_preminimize symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource test1_benchmark threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric torsion_restricted_sampling vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer zinc_homodimer_design
Test: ubuntu.gcc.integration.ubsan

Failed sub-tests (click for more details):
LayerDesign_ncaas LayerDesign_symm LayerSelector ReadResfile_with_selector TryDisulfPermutations bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_multirepeat bundlegridsampler_z0_offset bundlegridsampler_z1_offset bundlereporter_filter buried_unsat_voids_hbnet_design composition_energy_layers crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm d_workflow disulfidize_beta_cys hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbondstoresidue_selector helical_bundle helical_bundle_nonideal make_and_perturb_bundle_multirepeat mirror_symm perturb_helical_bundle perturb_helical_bundle_copying_pitch perturb_helical_bundle_epsilon perturb_helical_bundle_setting perturb_helical_bundle_z_offset simple_cycpep_predict_octahedral_metal smallmover_resselector symm_disulfidize threefold_symm_peptide_design voids_penalty_energy_design voids_penalty_energy_design_symmetry
Test: mac.clang.integration

Failed sub-tests (click for more details):
AnchoredDesign Enzrevert_xml FloppyTail InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerSelector LoopAnalyzer ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_graft antibody_numbering_converter assemble_domains_jd2 autosetup_metals_centroid backrub backrub_pilot batch_relax beta_strand_homodimer binselector binselector_probins broker_membrane buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans ccd_ends_graft_mover_rs classic_relax_1a19 cluster_alns create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline d_workflow dcys_disulfidize density_denovo density_refine density_refine_symm distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal entropy_correction enumerative_sampling enzdes farnesyl fast_relax favor_native_residue fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_from_loops fuzzy ga_ligand_dock gen_lig_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench hbonds hbonds_sp2 hbs_design helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump inv_kin_lig_loop_design inverse_rotamer_remodel jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_symmdef_file membrane_relax membrane_relax_hbond metal_setup metalloprotein_abrelax mf_fixbb_des mf_fixbb_sc mf_flexbb_sc min_pack_min mirror_symm motif_dna_packer_design mp_dock mp_dock_prepack mp_domain_assembly mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_span_ang_ref2015_memb mp_symdock mp_vis_emb mpi_multistate_design mr_protocols msd_mover multistage_rosetta_scripts mutate ncaa_fixbb netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities oligourea_design oligourea_predict oop_design oop_dock_design orbitals pH_mode pepspec pepspec_anchor_dock phiselector phosphonate place_simultaneously pna pocket_relax posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk pymol_cif range_relax_w_cst readin_dna_rna_protein relax_w_allatom_cst remodel remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb resource_database_locator rna_denovo_dna_bridge rna_design rna_motif rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_2 rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves scaffold_matcher score12_docking score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI sequence_tolerance simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter stored_residue_subset swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge swm_protein_preminimize symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource test1_benchmark threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric torsion_restricted_sampling vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer zinc_homodimer_design