Merge pull request #2953 from RosettaCommons/jadolfbr/ab_integration
Small Antibody_H3 and SnugDock updates
- Add setPoseExtraScores run to `InterfaceAnalyzerMover`(IAM) if calling non-const apply. This enables their output into the proper score file.
- Add running of `IAM` for `Antibody_H3` and `SnugDock` protocols if an antigen is present.
- Enable option `-run_snugdock` at the end of `Antibody_H3` for final models if needed.