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Revisions №59621

branch: master 「№59621」
Commited by: Labonte
GitHub commit link: 「163bc3503e9063a0」 「№2412」
Difference from previous tested commit:  code diff
Commit date: 2017-08-07 11:48:51

Merge pull request #2412 from RosettaCommons/JWLabonte/sugars/database Carbohydrates: H-Placement and Other Topology File Corrections This merge will correct problems with H-placement that occur when a sugar is not in an ideal chair when loaded in and other blatant topology file errors that have slipped through the cracks. All sugar `.params` files have been edited/standardized for H-placement, with the following exceptions: - `to3-alpha-Neup.params` and `to3-beta-Neup.params` — These are chemically impossible sugars and should _not_ be in the database to begin with; however, I am leaving their removal to a future pull request. - `to8-alpha-Neup.params` and `to4-alpha-Daup.params` — I discovered a `pose_from_saccharide_sequence()` error in loading these two sugars, yet they work fine when loaded from a `.pdb`. The latter is definitely not commonly used; it is only there for a proof-of-concept integration test set up by @everyday847. The former is very common. Please let me know if anyone finds H-placement issues still in the Neup files. This branch causes integration changes in every sugar test, because I have tweaked all coordinates. I've manually looked at every single one of the ideal structures to make sure that they are correct.