Merge pull request #1669 from RosettaCommons/vmullig/simple_cycpep_predict_features_firstmerge
Splitting pull request for simple_cycpep_predict
Since there will be some integration test changes, I want to merge this first part before the second part.
Tasks:
- Add options for torsion/angle/length space relaxation with:
- Flexible bond angles.
- Flexible bond angles and bond lengths.
- Add option for full Cartesian-space relaxation.
- Have the above options actually trigger appropriate rounds of relaxation.
- Bond angles.
- Bond angles + bond lengths.
- Cartesian-space relaxation.
- Integration tests for the above.
- Documentation.
- Beauty.