Merge pull request #1457 from RosettaCommons/jadolfbr/fix_seed_ensemble
Fix Seed Ensemble integration test
This should properly run the integration test for seed ensemble JD2. Thanks for @roccomoretti for the find!
This also properly reinstates certain protocol movers to work better with multiple different poses - AKA calls proper Mover functions to tell JD2 what to do. Most were already coded this way, but this explicitly says what to do.