Merge pull request #1452 from RosettaCommons/Cyrus/mergetarget
Cyrus/mergetarget
Included in this PR:
PR Cyrus 35: add comment clarifying pilot_apps.src.settings.release (there was some list traffic here)
PR Cyrus 31: global replace old UNC address with gmail address in doxygen tags (smlewi@unc->gmail)
PR Cyrus 33: Tweaks SSPredictionFilter (actually PsiPredInterface) to automatically allow for a second type of name mangling from a different version of runpsipred
PR Cyrus 32: Smlewis cyrus/beta nov15 score catcher: Catches the problem where you pass a beta weights file without the accompanying required flag to activate the params overrides. (exit from ScoreFunctionFactory in the (in)appropriate circumstance).
Also PR Cyrus 29, which got caught in a time vortex, and was merge -X theirs overwritten because Rhiju was forced to duplicate the code itself instead of taking it from its original crossfork PR.