Merge pull request #1262 from RosettaCommons/jadolfbr/antibodies/de_loop_design
Antibody DE Loop Design
Description
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This PR finally enables Proto CDR4, also known as the DE loop, to sequence design within RosettaAntibodyDesign. L4 and H4 are specified the same way as others within the cdr instruction file. L4 and H4 can also be specified as neighbor CDRs.
'DE' can used as in 'ALL' keyword in the instructions file to set options for both loops. Proto CDR4 is not designed by default.
Testing
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Unit tests have been updated to include and test this new functionality, and an integration test has been added. The current antibody_designer integration test has also been shorted by changing the min type.