Merge pull request #1138 from RosettaCommons/kimdn/master_dn_fixed
* SEWING
[sewing_hasher] automatic detailed score_file_name (just commented in
master to prevent integration test failure), default num_segments_to_match = 1, updated comments
[MonteCarloAssemblyMover] From now on, an option
(remove_non_contiguous_assembly_) is true by default
[ModelTrimmer] New options (leave_certain_model_ids, leave_models_with_H_terminal_ss,
model_should_have_at_least_1_H) added, if
'leave_parallel_way_H_bonded_models_by_terminal_strands_only' do
'leave_models_with_E_terminal_ss' in advance
[RepeatAssemblyMover] New option (threshold_score_of_complete_cycle,
default value is -0.5) is introduced
[SEWING overall] Minor code-cleanups
* SandwichFeatures
[WriteToFileFromSandwichFeatures] Code cleanup
[WriteToDBFromSandwichFeatures] Added a more reference regarding beta hairpin types