Merge pull request #1125 from RosettaCommons/everyday847/beta_util
1. Adds a toy app for evaluating a few 3_14 helices and point mutations vs. a target.
2. Fixes a bug with annotated_sequence that would totally screw up creating noncanonical poses from sequence--it would create them by jumps every time.
3. Messes around with my macrocycles pilot app a bit.
4. Integration tests for macrocycles app, since it is compiled by default.
5. Activates metapatches for residues other than just the peptoid 101, as they were meant to be!