Merge pull request #785 from RosettaCommons/vmullig/symm_layerdes
Allow LayerDesign to use symmetry
Currently, LayerDesign extracts the asymmetric unit of a symmetric pose, and uses that to define core, boundary, and surface layers. This adds an option to use the whole symmetric pose.
Tasks:
- [x] Add "use_symmetry" option.
- [x] Have the option alter LayerDesign's behaviour.
- [x] Integration test.
- [x] Documentation.
- [x] Beauty.
- [x] Also, pulling in a minor change to core::conformation::parameters::ParametersSet.hh. (It's something that will have to be tweaked when I fix the ResidueOP issue, and I want it in master so that I remember to do this, rather than in the branch where I added the functions, where the functions will be broken by a fix in master.)