Merge pull request #766 from RosettaCommons/JWLabonte/sugars/loops
Carbohydrates: Further removal of bad assumptions preventing loop modeling
Unit test failures are the same instabilities currently plaguing master and were not caused by this change set.
CCD_loop_closure, c-term_conjugation, carbohydrates, and rings integration test changes expected due to output changes.
inverse_rotamer_remodel, and the match tests are unstable