Merge pull request #611 from RosettaCommons/vmullig/fix_hbond_counter
Trying to fix several problems with the HbondsToResidue filter.
Tasks:
- Allowing apply-time parse of residue number (with support for reference poses).
- Adding proper setters and getters for internal data.
- Adding proper constructors, with full initialization of all data.
- Adding explicit option to consider bonds to other chains, and another to consider bonds in the current chain. Default behaviour is to consider ALL hydrogen bonds to selected residue, now, but the user can turn off out-of-chain or in-chain hydrogen bonds. (Previously, the filter didn't work with single-chain poses, or work properly with poses with more than two chains.)
- Update documentation.