Merging code duplication elimination efforts from everyday847/everyday847/simian
The pull request documents the specifics:
1) A refactored agglomerative hierarchical clustering system in numeric
2) rsigma_dot gets its data from the database now, instead of 3 separate, identical 866 line regions of the code
3) ChiralMover relies on data from the database (CHIRAL_EQUIVALENT in params files) rather than big std::maps
4) NCBB design apps rely on common main loop, statistics functions, and perturbation foldtree functions
5) Ditto the NCBB dock-design pilot apps/protocols, but the main loops are still separated (sampling differences)
Integration tests are limited to log output changes (a couple tracer name changes, basically)