Merge pull request #381 from RosettaCommons/vmullig/bin_prob
vmullig/bin_prob
Adding functions to the BinTransitionCalculator class to calculate the probability of seeing residue i+1 in whichever bin it's in given that residue i is in whichever bin that it's in (and vice versa), if that makes sense. This is needed for a bin transition based energy term.
No unit test failures. Expect integration tests in all tests that use bin transition probabilities (bin_initialization, bin_perturbation, genkic_bin_setting, genkic_bin_sampling, genkic_bin_perturbing). This is due to reduction in default verbosity of BinTransitionCalculator and BinTransitionData objects (switching a number of tracers to debug tracers).