Forgot to add constant_seed flag to the integartion tests, (which caused them to fail):
splice_out_generic
splice_out_longer
splice_out_shorter_loop
modified: tests/integration/tests/splice_out_generic/flags
modified: tests/integration/tests/splice_out_longer/4JB9.pdb
modified: tests/integration/tests/splice_out_longer/flags
modified: tests/integration/tests/splice_out_shorter_loop/flags