# [ONE LINE DESCRIPTION OF CHANGE]
# NEWS: [DETAILED DESCRIPTION OF CHANGE]
# ----------------------------------------
# Unit test status: [Pass/Fail/Not Run]
# Integration test status: [Number of changed tests / Not Run]
# [NAME_OF_CHANGED_TEST_1]: explanation of change explanation of change ...
# explanation of change, cont'd.
# [NAME_OF_CHANGED_TEST_2]: explanation of change
#+BugFix [BUG_NUMBER] [LINK_TO_BUG]
# Uncomment and fill in the line above to indicate this commit
# fixes a known bug.
# On branch master
# Your branch is ahead of 'origin/master' by 105 commits.
#
# Changes to be committed:
# (use "git reset HEAD <file>..." to unstage)
#
# modified: database/scoring/weights/gauss1.wts
# modified: source/src/apps.src.settings
# modified: source/src/apps/pilot/phil/test1.cc
# new file: source/src/apps/public/motif_tools/extract_motifs.cc
# modified: source/src/apps/public/vip.cc
# modified: source/src/basic/options/full-options-list.md
# modified: source/src/basic/options/keys/OptionKeys.cc.gen0.hh
# modified: source/src/basic/options/keys/OptionKeys.cc.gen1.hh
# modified: source/src/basic/options/keys/OptionKeys.cc.gen2.hh
# modified: source/src/basic/options/keys/motifs.OptionKeys.gen.hh
# modified: source/src/basic/options/option.cc.gen.hh
# modified: source/src/basic/options/options.dox
# modified: source/src/basic/options/options_rosetta.py
# modified: source/src/devel/splice/Splice.cc
# modified: source/src/devel/splice/Splice.hh
# modified: source/src/protocols/frags/TorsionFragment.cc
# modified: source/src/protocols/frags/TorsionFragment.fwd.hh
# modified: source/src/protocols/frags/TorsionFragment.hh
# modified: source/src/protocols/frags/VallData.cc
# modified: source/src/protocols/frags/VallData.hh
# modified: source/src/protocols/membrane/MembraneUnitTestMover.cc
# modified: source/src/protocols/toolbox/task_operations/DatabaseThread.cc
# modified: source/src/protocols/toolbox/task_operations/DatabaseThread.hh
# modified: source/src/protocols/vip/VIP_Mover.cc
# modified: source/src/protocols/vip/VIP_Report.cc
# modified: tests/integration/tests/vip/flags
#
# Untracked files:
# (use "git add <file>..." to include in what will be committed)
#
# source/PCS_pcs_edit.edit
# source/compilation.log
# source/compilaton.log
# source/pcs_edit.edit
# source/src/protocols/xxx.edit
# source/src/xxx.edit
# source/xxx.edit