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Revisions №14750

branch: commits 「№14750」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4496」
Merge: 「0b033c133」「5a4dd5bfa」  code diff
Scheduled at: 2020-02-20 17:22:36.900628
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration

Pull Request №4496 vmullig/citation_manager←vmullig/group_branch_citation_manager Merge: 0b033c13397bc56b73bd98aa78aa71bc6516ea97←5a4dd5bfab578dd9d5fd2a1b936d00f15613b276 Add citations from the WinterRosettaCon 2020 Tuesday hackathon ---------------- Merge commit message: Fixing remaining compilation issues.

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AnchoredDesign KIC_vicinity KIC_with_fragments LayerDesign_symm PolarDesign2019 ResidueDisorder SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter auto-drrafter_final_results auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 backrub_interface_ddG batch_relax beta_strand_homodimer bin_initialization bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_multirepeat buried_area_filter buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm ccd_ends_graft_mover_rs central_class_modification classic_relax_1a19 create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization cycpep_design_pipeline d_workflow database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_refine density_refine_symm disulfidize_beta_cys docking_distance_constraints docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_prepack docking_site_constraints drrafter_setup drrafter_setup_build_missing drrafter_setup_protein_dock drrafter_setup_real_test_H drrafter_setup_real_test_H_no_init drrafter_setup_ribosome_test drrafter_setup_simple enzdes evolution farnesyl fast_relax features_parallel features_pdb fiber_diffraction_fad flexpepdock flexpepdock_abinitio fold_and_dock fold_from_loops ga_ligand_dock genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_asymm hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbs_design helical_bundle_predict helical_bundle_predict_skipping_residues helix_from_sequence homodimer_fnd_ref2015_memb hts_io hybridization identify_cdr_clusters interaction_graph_summary_metric jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking longest_continuous_polar_segment_filter metal_setup metalloprotein_abrelax metalloprotein_broker mf_fixbb_des mf_fixbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm motif_dna_packer_design mp_domain_assembly mp_domain_assembly_FtsQ mp_mutate_relax mp_range_relax mp_relax mr_protocols next_generation_KIC nonideal_rtmin oligourea_design oligourea_predict oop_design peptiderive pertmin pocket_relax polyaramid_test_trivial ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG protocol_metric range_relax_w_cst real_virt_mover relax_w_allatom_cst remodel_disulfides_rosettascripts repack_with_elec_dens repeat_relax resource_database_locator restype_converter rnp_ddg_finalize rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rosetta_scripts_hbond_options rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking sasa_metric_options sdf_reader seed_ensemble_JD2_JI selected_residue_count_metric simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tma simple_glycosylation simple_grafting_movers simple_hbondstoatom simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset supercharge surface_docking swa_protein_CCDclose swa_protein_build_at_Cterminus swa_protein_build_at_Nterminus swa_protein_combine_loops swa_protein_loop_sampler swm_beta_peptide_loop swm_protein_CCDmove swm_protein_from_scratch swm_protein_loop_sampler swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond symm_disulfidize symm_rotamer_boltzmann task_selector tcrmodel threefold_symm_peptide_design torsion_restricted_sampling vip voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_homodimer_design zinc_homodimer_setup
Test: mac.clang.integration

Failed sub-tests (click for more details):
ThreadingInputter antibody_designer antibody_designer_camelid antibody_designer_xml antibody_numbering_converter buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm ccd_ends_graft_mover_rs central_class_modification create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cyclization d_workflow database_session_resource ddG_scan disulfidize_beta_cys features_parallel features_pdb fiber_diffraction_fad fold_and_dock fold_from_loops ga_ligand_dock genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars glycan_anomers glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench grid_scores_features hts_io interaction_graph_summary_metric kinemage_grid_output ligand_database_io ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_water_docking make_symmdef_file metalloprotein_broker mhc_epitope mhc_epitope_nmer_preload minimize_with_elec_dens mirror_symm oligourea_design protocol_metric real_virt_mover relax_w_allatom_cst repack_with_elec_dens restype_converter rosetta_scripts_hbond_options rosetta_scripts_loops rosie_ligand_docking sasa_metric_options sdf_reader seed_ensemble_JD2_JI selected_residue_count_metric simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metrics simple_metrics_per_residue small_molecule_lattice_dock startfrom_file symm_disulfidize threefold_symm_peptide_design voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_homodimer_setup