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Revisions №14681

branch: commits 「№14681」
Commited by: Yue Ying
GitHub Pull Request link: 「№4490」
Merge: 「3d4081e71」「497f12c35」  code diff
Scheduled at: 2020-02-11 00:42:46.202145
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit

Pull Request №4490 master←Add-params-of-Aldopentofuranosyls-to-Database Merge: 3d4081e711726d934e392906cc1d447f4c06d09e←497f12c3572180f6d91ba96798daecb1aceaa046 Add Aldopentofuranosyls to Database ---------------- Merge commit message: Update residue_types.txt (add aldopentofuranosyls)

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Test: linux.clang.unit

Failed sub-tests (click for more details):
core:AnnotatedSequenceTests:test_make_pose_from_saccharide_sequence core:AnnotatedSequenceTests:test_residue_types_from_saccharide_sequence core:CarbohydrateInfoTests:test_CarbohydrateInfo_branch_point core:CarbohydrateInfoTests:test_Pose_chain_sequence_w_polysaccharide core:CarbohydrateInfoTests:test_Pose_chi_w_polysaccharide core:CarbohydrateInfoTests:test_Pose_phi_psi_omega_w_polysaccharide core:CarbohydratePoseUtilityFunctionTests:test_TorsionID_query_functions core:CarbohydratePoseUtilityFunctionTests:test_exocyclic_detection core:CarbohydratePoseUtilityFunctionTests:test_find_seqpos_of_saccharides_relatives core:CarbohydratePoseUtilityFunctionTests:test_get_downstream_residue_that_this_torsion_moves core:CarbohydratePoseUtilityFunctionTests:test_get_glycosidic_TorsionIDs core:CarbohydratePoseUtilityFunctionTests:test_get_glycosidic_bond_residues core:CarbohydratePoseUtilityFunctionTests:test_get_linkage_position_of_saccharide_residue core:CarbohydratePoseUtilityFunctionTests:test_get_non_NU_TorsionID_from_AtomIDs core:CarbohydratePoseUtilityFunctionTests:test_get_reference_atoms core:CarbohydratePoseUtilityFunctionTests:test_glycan_branch core:CarbohydratePoseUtilityFunctionTests:test_glycan_iupac_movemap_setup core:CarbohydratePoseUtilityFunctionTests:test_glycan_leafs core:CarbohydratePoseUtilityFunctionTests:test_glycan_movemap_setup core:CarbohydratePoseUtilityFunctionTests:test_glycan_trimming core:CarbohydratePoseUtilityFunctionTests:test_glycosylate_pose core:CarbohydrateScoringUtilityFunctionTests:test_function_assignment_based_on_type_of_linakge core:CarbohydrateStereochemTests:test_rings_and_stereochemistries core:CarbohydrateStereochemTests:test_virtual_atom_placement core:ChainbreakEnergyTests:test_chainbreak_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_deriv_check core:ChainbreakEnergyTests:test_chainbreak_deriv_check_with_sugars core:ChainbreakEnergyTests:test_chainbreak_n_methylation_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_peptoid_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_proline_cyclic_geometry_deriv_check core:ChemistryNamespaceUtilityFunctionTests:test_is_mainchain_torsion_also_ring_torsion core:ConformationUtilityFunctionTests:test_find_bond_torsion_with_nearest_orientation core:ConformationUtilityFunctionTests:test_position_of_atom_on_ring core:ConformationUtilityFunctionTests:test_residue_from_name core:GlycanResidueSelectorTest:test_residue_selectors core:GlycanTreeSetTests:test_glycan_end_residue_deletion core:GlycanTreeSetTests:test_glycan_tree_sequence core:GlycanTreeSetTests:test_glycan_tree_set core:GlycanTreeSetTests:test_glycosylations core:GlycanTreeSetTests:test_non_glycan_pose core:GlycanTreeSetTests:test_residue_deletions_and_additions core:GlycanTreeSetTests:test_serialization_and_clone core:GlycanTreeSetTests:test_serialization_observation core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:PoseToStructFileRepConverterTests:test_assignment_of_new_chainIDs_for_ligands core:PoseToStructFileRepConverterTests:test_conect_records core:PoseToStructFileRepConverterTests:test_foldtree_records core:PoseToStructFileRepConverterTests:test_membrane_hetatm core:PoseToStructFileRepConverterTests:test_title_section_records core:PoseToStructFileRepConverterTests:test_torsion_records core:ResidueInSequenceMotifSelectorTest:test_residue_selectors core:ResiduePropertySelectorTests:test_selector core:ResiduePropertySelectorTests:test_xml_interface core:RingUtilityFunctionTests:test_is_atom_axial_or_equatorial core:RingUtilityFunctionTests:test_is_atom_axial_or_equatorial_to_ring core:SimpleMetricTests:test_composite_real_metric core:SimpleMetricTests:test_composite_string_metric core:SimpleMetricTests:test_glycan_layer_metric core:SimpleMetricTests:test_interaction_energy_metric core:SimpleMetricTests:test_per_residue_clash_metric core:SimpleMetricTests:test_per_residue_real_metric core:SimpleMetricTests:test_per_residue_string_metric core:SimpleMetricTests:test_real_metric core:SimpleMetricTests:test_residue_summary_metric core:SimpleMetricTests:test_sasa_metric core:SimpleMetricTests:test_seq_metric core:SimpleMetricTests:test_ss_metric core:SimpleMetricTests:test_string_metric core:SimpleMetricTests:test_utility_metrics core:TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite core:TestAutoDetectGlycanConnections:test_auto_detect_pdb_read core:ThreeLetterCodeAmbiguityTests:test_resolution_of_linkage_information core:ThreeLetterCodeAmbiguityTests:test_resolution_of_shared_3_letter_codes core:glycan_PDBs_IO:test_branched protocols:FAVirtMoverTests:test_fa_to_virt protocols:FAVirtMoverTests:test_virt_scoring protocols:FAVirtMoverTests:test_virt_to_fa protocols:GlycosyltransferaseMoverTests:test_apply protocols:MoverJobTests:test_basic_mover_job protocols:MoverJobTests:test_seq_mover_job protocols:RingPlaneFlipMoverTests:test_RingPlaneFlipMover protocols:ShearMoverTest:test_ShearMover protocols:ShearMoverTest:test_ShearMover_w_sugar protocols:ShearMoverTest:test_one_shear_move protocols:SmallMoverTest:test_SmallMover protocols:SmallMoverTest:test_SmallMover_w_sugar protocols:SmallMoverTest:test_one_small_move protocols:TautomerizeAnomerMoverTests:test_TautomerizeAnomerMover
Test: mac.clang.unit

Failed sub-tests (click for more details):
core:AnnotatedSequenceTests:test_make_pose_from_saccharide_sequence core:AnnotatedSequenceTests:test_residue_types_from_saccharide_sequence core:CarbohydrateInfoTests:test_CarbohydrateInfo_branch_point core:CarbohydrateInfoTests:test_Pose_chain_sequence_w_polysaccharide core:CarbohydrateInfoTests:test_Pose_chi_w_polysaccharide core:CarbohydrateInfoTests:test_Pose_phi_psi_omega_w_polysaccharide core:CarbohydratePoseUtilityFunctionTests:test_TorsionID_query_functions core:CarbohydratePoseUtilityFunctionTests:test_exocyclic_detection core:CarbohydratePoseUtilityFunctionTests:test_find_seqpos_of_saccharides_relatives core:CarbohydratePoseUtilityFunctionTests:test_get_downstream_residue_that_this_torsion_moves core:CarbohydratePoseUtilityFunctionTests:test_get_glycosidic_TorsionIDs core:CarbohydratePoseUtilityFunctionTests:test_get_glycosidic_bond_residues core:CarbohydratePoseUtilityFunctionTests:test_get_linkage_position_of_saccharide_residue core:CarbohydratePoseUtilityFunctionTests:test_get_non_NU_TorsionID_from_AtomIDs core:CarbohydratePoseUtilityFunctionTests:test_get_reference_atoms core:CarbohydratePoseUtilityFunctionTests:test_glycan_branch core:CarbohydratePoseUtilityFunctionTests:test_glycan_iupac_movemap_setup core:CarbohydratePoseUtilityFunctionTests:test_glycan_leafs core:CarbohydratePoseUtilityFunctionTests:test_glycan_movemap_setup core:CarbohydratePoseUtilityFunctionTests:test_glycan_trimming core:CarbohydratePoseUtilityFunctionTests:test_glycosylate_pose core:CarbohydrateScoringUtilityFunctionTests:test_function_assignment_based_on_type_of_linakge core:CarbohydrateStereochemTests:test_rings_and_stereochemistries core:CarbohydrateStereochemTests:test_virtual_atom_placement core:ChainbreakEnergyTests:test_chainbreak_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_deriv_check core:ChainbreakEnergyTests:test_chainbreak_deriv_check_with_sugars core:ChainbreakEnergyTests:test_chainbreak_n_methylation_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_peptoid_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_proline_cyclic_geometry_deriv_check core:ChemistryNamespaceUtilityFunctionTests:test_is_mainchain_torsion_also_ring_torsion core:ConformationUtilityFunctionTests:test_find_bond_torsion_with_nearest_orientation core:ConformationUtilityFunctionTests:test_position_of_atom_on_ring core:ConformationUtilityFunctionTests:test_residue_from_name core:GlycanResidueSelectorTest:test_residue_selectors core:GlycanTreeSetTests:test_glycan_end_residue_deletion core:GlycanTreeSetTests:test_glycan_tree_sequence core:GlycanTreeSetTests:test_glycan_tree_set core:GlycanTreeSetTests:test_glycosylations core:GlycanTreeSetTests:test_non_glycan_pose core:GlycanTreeSetTests:test_residue_deletions_and_additions core:GlycanTreeSetTests:test_serialization_and_clone core:GlycanTreeSetTests:test_serialization_observation core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:PoseToStructFileRepConverterTests:test_assignment_of_new_chainIDs_for_ligands core:PoseToStructFileRepConverterTests:test_conect_records core:PoseToStructFileRepConverterTests:test_foldtree_records core:PoseToStructFileRepConverterTests:test_membrane_hetatm core:PoseToStructFileRepConverterTests:test_title_section_records core:PoseToStructFileRepConverterTests:test_torsion_records core:ResidueInSequenceMotifSelectorTest:test_residue_selectors core:ResiduePropertySelectorTests:test_selector core:ResiduePropertySelectorTests:test_xml_interface core:RingUtilityFunctionTests:test_is_atom_axial_or_equatorial core:RingUtilityFunctionTests:test_is_atom_axial_or_equatorial_to_ring core:SimpleMetricTests:test_composite_real_metric core:SimpleMetricTests:test_composite_string_metric core:SimpleMetricTests:test_glycan_layer_metric core:SimpleMetricTests:test_interaction_energy_metric core:SimpleMetricTests:test_per_residue_clash_metric core:SimpleMetricTests:test_per_residue_real_metric core:SimpleMetricTests:test_per_residue_string_metric core:SimpleMetricTests:test_real_metric core:SimpleMetricTests:test_residue_summary_metric core:SimpleMetricTests:test_sasa_metric core:SimpleMetricTests:test_seq_metric core:SimpleMetricTests:test_ss_metric core:SimpleMetricTests:test_string_metric core:SimpleMetricTests:test_utility_metrics core:TestAutoDetectGlycanConnections:test_auto_detect_mmtf_readwrite core:TestAutoDetectGlycanConnections:test_auto_detect_pdb_read core:ThreeLetterCodeAmbiguityTests:test_resolution_of_linkage_information core:ThreeLetterCodeAmbiguityTests:test_resolution_of_shared_3_letter_codes core:glycan_PDBs_IO:test_branched protocols:FAVirtMoverTests:test_fa_to_virt protocols:FAVirtMoverTests:test_virt_scoring protocols:FAVirtMoverTests:test_virt_to_fa protocols:GlycosyltransferaseMoverTests:test_apply protocols:MoverJobTests:test_basic_mover_job protocols:MoverJobTests:test_seq_mover_job protocols:RingPlaneFlipMoverTests:test_RingPlaneFlipMover protocols:ShearMoverTest:test_ShearMover protocols:ShearMoverTest:test_ShearMover_w_sugar protocols:ShearMoverTest:test_one_shear_move protocols:SmallMoverTest:test_SmallMover protocols:SmallMoverTest:test_SmallMover_w_sugar protocols:SmallMoverTest:test_one_small_move protocols:TautomerizeAnomerMoverTests:test_TautomerizeAnomerMover