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Revisions №14437

branch: commits 「№14437」
Commited by: Vikram K. Mulligan
GitHub commit link: 「e449410781586b19」
Commit date: 2020-01-08 04:50:56
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit mac.PyRosetta.unit cppcheck mpi mpi.serialization build.header build.levels build.ninja_debug graphics static linux.ui mac.ui beautification serialization integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify

Modifying multithreaded scoring to use low-overhead variant.

Vikram K. Mulligan 5 months
This is vmullig/multithreaded_scoring12.
Rosetta Benchmark 5 months
Tests for this revision was automatically canceled due to critical failure of test: linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit
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Test: linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchorFinder AnchoredDesign AnchoredPDBCreator BuildPeptide ContactMolecularSurface DARC_electrostatics DARC_make_ray_files DARC_sampling_on_the_fly DARC_shapeonly DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LoopAnalyzer LoopLengthChange ModifyVariantTypeMover PDB_diagnostic ProQ RBOut RescorePDDF ResidueDisorder SID_rescore SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data angle_recovery_stats antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autosetup_metals_centroid backbonegridsampler_multiresidue backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer binselector binselector_probins broker broker_membrane bundlegridsampler bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_z0_offset bundlegridsampler_z1_offset burial_measure_centroid buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm c-term_conjugation calculate_sasa cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_disulfide_scores centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster cluster_alns cluster_filter code_template_tests_app code_template_tests_src code_template_tests_unit combine_silent constel contactMap count_cycpep_sequences coupled_moves create_clash-based_repack_shell create_sequence_motif crossaln crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info cstfile_to_theozyme_pdb custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal drrafter_error_estimation drrafter_run duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs extract_pdbs farfar_mrna farnesyl fast_relax fast_relax_scripts favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction fiber_diffraction_fad fit_helixparams fit_helixparams_a3b fit_helixparams_rms fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_and_dock fold_cst_new fold_from_loops fragment_picker fragmentpicker_integration_demo fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_clash_check glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design header_using_check helical_bundle_predict helix_from_sequence hierarchical_clustering homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hshash_utils hts_io hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jrelax jscore kinemage_grid_output kinematic_looprelax ld_converter ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_hash loop_modeling make_exemplar make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_rot_lib make_symmdef_file match_1c2t match_1n9l match_6cpa match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mg_modeler mg_modeler_lores mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_6Dloopclose minimize_with_elec_dens mirror_symm mm_params mmtfIO_score_test motif_dna_packer_design motif_extraction motif_score_filter mp_dock mp_dock_prepack mp_dock_setup mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_interface_statistics mp_loadtime mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_score_jd2 mp_span_ang_ref2015_memb mp_span_from_pdb mp_symdock mp_symmetry_load mp_transform mp_transform_optimize mp_vis_emb mpi_multistate_design mpil_find_pore_ahelical mpil_find_pore_bbarrel mpil_load_implicit_lipids mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC noe_assignment non-canonical_connectivities nonideal_rtmin nucleobase_sample_around number_of_residuetypes oligourea_design oligourea_predict oop_create oop_design oop_dock_design orbitals pH_mode pepspec_anchor_dock peptiderive per_residue_energies per_residue_sc_sasa per_residue_solvent_exposure pertmin perturb_helical_bundle phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif r_pdb2top r_rmsf ralford_dump_rotamers range_relax_w_cst rb_recces read_polymeric_components readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens report_hbonds_for_plugin res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator restype_converter rna_add_WC_stats rna_assemble rna_assemble_legacy rna_cluster rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_helix rna_minimize rna_minimize_6D_loop_close rna_motif rna_predict_chem_map rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_setup rnp_ddg_calc_wt rnp_ddg_finalize rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rnp_ddg_relax_setup rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_info rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_aln score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI select_best_unique_ligand_poses selected_residue_count_metric sequence_recovery sequence_tolerance set_torsion shobuns silent2frag simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue site_constraint small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stepwise_lores stored_residue_subset struc_set_fragment_picker super_aln supercharge surface_docking swa_protein_CCDclose swa_protein_build_at_Cterminus swa_protein_build_at_Nterminus swa_protein_cluster swa_protein_combine_loops swa_protein_loop_sampler swa_protein_prepack swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_04_clustering swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_14_combine_long_loop_filtering swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_clusterer swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_beta_peptide_loop swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_CCDmove swm_protein_from_scratch swm_protein_loop_sampler swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_protein_preminimize swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource symmetry_multicomponent tcrmodel template_features test1_benchmark test_computed_saxs_spectrum test_d_l_readin test_energy_method_options thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling validate_database vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: mac.clang.integration

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AnchoredDesign AnchoredPDBCreator ContactMolecularSurface DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FilterReportAsPoseExtraScoresMover FloppyTail InterfaceAnalyzer InterfaceAnalyzer_allscores InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile InterfaceAnalyzer_tracer InterfaceDdG KIC_refine KIC_vicinity KIC_with_fragments LoopAnalyzer LoopLengthChange ModifyVariantTypeMover RBOut ResidueDisorder SSElementSelector SnugDock ThreadingInputter UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm abinitio add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 auto-drrafter_setup_run_R1 auto-drrafter_setup_run_R2 auto-drrafter_setup_run_R3 autosetup_metals_centroid backbonegridsampler_multiresidue backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer binselector binselector_probins broker bundlegridsampler bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_z0_offset bundlegridsampler_z1_offset buried_area_filter buried_unsat_kinemage buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification centroid_from_fullatom classic_relax_1a19 cleanAlignment cluster_alns constel coupled_moves create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cs_rosetta_rna cst_info custom_basetype_packer_palette cyclization cycpep_design_pipeline cycpep_symmetry_filter d_workflow database_jd2_compact_io database_jd2_io database_session_resource ddG_ensemble ddG_of_mutation ddG_scan density_denovo density_refine density_refine_symm density_tools design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_local_refine_min docking_low_res docking_prepack docking_site_constraints drrafter_run drrafter_setup_ribosome_test duplicate_header_guards energy_based_clustering_alpha_aa energy_based_clustering_alpha_aa_bin_analysis energy_based_clustering_alpha_aa_dihedral entropy_correction enumerative_sampling enzdes enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym erraser_minimize evolution extract_atomtree_diffs farfar_mrna farnesyl fast_relax favor_native_residue features features_database_schema features_parallel features_pdb fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_cst_new fold_from_loops fuzzy ga_ligand_dock gen_lig_grids generate_6Dloopclose genkic_bin_perturbing genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars geometric_solvation glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis grid_scores_features hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hts_io hybridization hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric interface_energy inv_kin_lig_loop_design inverse_rotamer_remodel jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout job_definition_script_vars jscore kinemage_grid_output kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_mainchain_potential make_mainchain_potential_symm make_mainchain_potential_symm_preproline make_symmdef_file match_xml measure_lcaa_radii membrane_abinitio metal_setup metalloprotein_abrelax metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min minimize_with_elec_dens mirror_symm mmtfIO_score_test motif_dna_packer_design motif_score_filter mp_dock mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_relax_w_ligand mp_span_ang_ref2015_memb mp_symdock mp_symmetry_load mpi_multistate_design mr_protocols multistage_rosetta_scripts multistage_rosetta_scripts_clustering multithreaded_fastdesign mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities nonideal_rtmin nucleobase_sample_around oligourea_design oligourea_predict oop_design orbitals pepspec peptiderive per_residue_energies pertmin perturb_helical_bundle phiselector phosphonate place_simultaneously pna pna_base_pairs pocket_measure pocket_relax pocket_suggest_targets polyaramid_test_trivial posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric pwsho pymol_cif range_relax_w_cst rb_recces readin_dna_rna_protein real_virt_mover recces_turner recon_design relax_w_allatom_cst remodel remodel_disulfides remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens res_lipo_ref2015_memb residue_energy_breakdown resource_database_locator rna_assemble rna_assemble_legacy rna_denovo rna_denovo_RNP_low_res rna_denovo_RNP_refine_native rna_denovo_base_pair_constraints rna_denovo_base_pair_setup rna_denovo_base_pair_setup_legacy rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_bps_helix_ends_legacy rna_denovo_bps_legacy rna_denovo_dna_bridge rna_denovo_fragment_homology_exclusion rna_denovo_grid_vdw rna_denovo_grid_vdw_legacy rna_denovo_lariat rna_denovo_legacy rna_denovo_new_FT_2in_dens rna_denovo_new_FT_5P_j12_leadzyme rna_denovo_new_FT_RNP_2prot_dens rna_denovo_new_FT_rna_two_chains rna_denovo_new_libs rna_denovo_symm_hack rna_design rna_farfar_block_stack rna_farfar_noncanonical_hairpin rna_farfar_syn_chi_res rna_minimize rna_motif rna_puzzle11_H2H3H4_run3_connectU40 rna_puzzle12_P5P6P7_DMS rna_puzzle5_P15P3P8_noP4P6_4RB_G208phosphate_ligation rna_puzzle5_p2_GAAA_mini rna_puzzle6_U75G76A77_on_thread1 rna_puzzle6_j67_into_p6p7rigidbody_thread1 rna_ribosome_tether rna_score rna_screen_phosphates rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_relax_command_1 rnp_ddg_relax_command_2 rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rotamer_recovery_compare_two_structures rs_flexbbmoves rs_loophash sasa_metric_options score12_docking score_jd2 score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI selected_residue_count_metric sequence_recovery set_torsion shobuns simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_bondangle_bondlength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_glycosylation simple_grafting_movers simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_per_residue small_molecule_lattice_dock splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_rna_erraser swa_rna_gagu_01_append swa_rna_gagu_02_prepend swa_rna_gagu_03_append_to_silent swa_rna_gagu_05_prepend_to_5primeterminus swa_rna_gagu_06_append_to_3primeterminus swa_rna_gagu_07_prepend_dinucleotide swa_rna_gagu_08_append_dinucleotide swa_rna_gagu_09_sample_virtual_ribose swa_rna_gagu_10_prepend_and_ccd_close swa_rna_gagu_11_append_and_ccd_close swa_rna_gagu_12_helix_addition swa_rna_gagu_13_chunk_combination_and_closure swa_rna_gagu_15_combine_long_loop_sampling swa_rna_gagu_16_prepend_dinucleotide_on_dinucleotide swa_rna_gagu_17_append_floating_base swa_rna_gagu_18_rebuild_bulge swa_rna_gagu_19_prepend_floating_base_by_jump swa_rna_gagu_20_append_floating_base_by_jump swa_rna_gagu_21_prepend_dinucleotide_on_dinucleotide_by_jump swa_rna_gagu_22_prepend_and_kic_close swa_rna_gagu_23_append_and_kic_close swa_rna_loop_sampler sweep_respair_energies swm_add_rosettascripts swm_build_full_model swm_dna_bridge swm_dna_loop swm_general_polymer_sampler swm_l_rna swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_checkpoint_partition swm_rna_fourwayjunction swm_rna_loop_design swm_rna_move_align_dock swm_rna_move_inside_helix_by_bond swm_rna_move_inside_helix_by_jump swm_rna_move_two_strands swm_rna_nickedhelix swm_rna_protonated_adenosine swm_rna_singleloop swm_rna_srl_triplet symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource tcrmodel test1_benchmark test_energy_method_options thermal_sampler threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs torsion_restricted_sampling vancomycin voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file zinc_heterodimer zinc_homodimer_design zinc_homodimer_setup
Test: linux.clang.performance

Failed sub-tests (click for more details):
core_scoring_Score_100x_envsmooth
Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_10pctaro:test_energy_eval_ten_percent_aromatic core:AACompositionEnergyTests_1W1Y:test_energy_eval_one_trp_one_tyr core:AACompositionEnergyTests_1W:test_energy_eval_exactly_one_trp core:AACompositionEnergyTests_20pctpro:test_energy_eval_twenty_percent_pro core:AACompositionEnergyTests_20pctprofract:test_energy_eval_twenty_percent_pro_fract_ranges core:AACompositionEnergyTests_2WY:test_energy_eval_exactly_two_trportyr core:AACompositionEnergyTests_2aro:test_energy_eval_two_aromatics core:AACompositionEnergyTests_3ACPC:test_energy_eval_exactly_three_transACPC core:AACompositionEnergyTests_aliphnotpro:test_energy_eval_aliphatic_not_pro core:AACompositionEnergyTests_bools:test_energy_eval_complex_boolean_logic core:AACompositionEnergyTests_consttail:test_tailfunctions_const_lin core:AACompositionEnergyTests_interpolate_linear:test_interpolation_linear_tails core:AACompositionEnergyTests_linconsttail:test_tailfunctions_lin_const core:AACompositionEnergyTests_packer:test_energy_annealing core:AACompositionEnergyTests_quadratail:test_tailfunctions_quadratic core:AACompositionEnergyTests_quadratic_interpolation:test_interpolation_quadratic_tails core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:ChainbreakEnergyTests:test_chainbreak_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_deriv_check core:ChainbreakEnergyTests:test_chainbreak_deriv_check_with_sugars core:ChainbreakEnergyTests:test_chainbreak_n_methylation_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_peptoid_cyclic_geometry_deriv_check core:ChainbreakEnergyTests:test_chainbreak_proline_cyclic_geometry_deriv_check core:CyclicGeometryTests:test_cyclic_permutation_cart_bonded core:CyclicGeometryTests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTests:test_cyclic_permutation_fa_atr core:CyclicGeometryTests:test_cyclic_permutation_fa_dun core:CyclicGeometryTests:test_cyclic_permutation_fa_elec core:CyclicGeometryTests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTests:test_cyclic_permutation_fa_rep core:CyclicGeometryTests:test_cyclic_permutation_fa_sol core:CyclicGeometryTests:test_cyclic_permutation_hbonds core:CyclicGeometryTests:test_cyclic_permutation_omega core:CyclicGeometryTests:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTests:test_cyclic_permutation_pro_close core:CyclicGeometryTests:test_cyclic_permutation_rama core:CyclicGeometryTests:test_cyclic_permutation_rama_prepro core:CyclicGeometryTests:test_cyclic_permutation_talaris2014 core:CyclicGeometryTests:test_cyclic_permutation_yhh_planarity core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_cart_bonded core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_dslf_fa13 core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_atr core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_dun core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_elec core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_intra_rep core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_rep core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_fa_sol core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_hbonds core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_omega core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_p_aa_pp core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_pro_close core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_rama core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_rama_prepro core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_talaris2014 core:CyclicGeometryTests_nmethyl:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_omega core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_rama core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_betanov15_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_omega core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_rama core:CyclicGeometry_betanov16_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_beta core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_rama core:CyclicGeometry_nmethyl_beta_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_omega core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_rama core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_nmethyl_betanov15_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_beta_nov15 core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_dun core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_lk_ball_wtd core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_rama_prepro core:CyclicGeometry_peptoid_Tests:test_cyclic_permutation_yhh_planarity core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_beta_nov16 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_cart_bonded core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_current_default_scorefxn core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_dslf_fa13 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_atr core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_dev core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_rot core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_dun_semi core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_elec core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_atr_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_elec core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_rep_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_intra_sol_xover4 core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_rep core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_fa_sol core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hbonds core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_hxl_tors core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_bridge_uncpl core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_lk_ball_iso core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_omega core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_p_aa_pp core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_pro_close core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama core:CyclicGeometry_peptoid_beta_Tests:test_cyclic_permutation_rama_prepro core:HBNetEnergyTests:test_basic_and_symmetric_scoring core:HBNetEnergyTests:test_linear_scoring core:HBNetEnergyTests:test_log_scoring core:HBNetEnergyTests:test_max_network_size core:HBNetEnergyTests:test_quadratic_scoring core:HBNetEnergyTests:test_sqrt_scoring core:InteractionGraphFactoryTests:test_DensePDInteractionGraph core:InteractionGraphFactoryTests:test_DoubleLazyInteractionGraph core:InteractionGraphFactoryTests:test_LazyInteractionGraph core:InteractionGraphFactoryTests:test_LinearMemoryInteractionGraph core:InteractionGraphFactoryTests:test_LinearMemorySurfaceInteractionGraph core:InteractionGraphFactoryTests:test_PDInteractionGraph core:InteractionGraphFactoryTests:test_PDSurfaceInteractionGraph core:LinearChainbreakEnergyTests:test_linear_chainbreak_deriv_check core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MPSpanAngleEnergyTests:test_calc_span_score core:MPSpanAngleEnergyTests:test_compute core:MPSpanAngleEnergyTests:test_finalize_total_energy core:MPSpanAngleEnergyTests:test_find_helix_vector core:MPSpanInsertionEnergyTests:test_calc_span_score core:MPSpanInsertionEnergyTests:test_compute core:MPSpanInsertionEnergyTests:test_create_updated_spans core:MPSpanInsertionEnergyTests:test_finalize_total_energy core:MPSpanInsertionEnergyTests:test_spline_by_z core:NMerSVMEnergyTests:test_eval_energy core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:NetChargeEnergyTests_tailfxns:test_constant_tailfxns core:NetChargeEnergyTests_tailfxns:test_linear_tailfxns core:NetChargeEnergyTests_tailfxns:test_quadratic_tailfxns core:PDB_w_glycans_IO:test_glycan_fragment core:PDB_w_glycans_IO:test_pdb_io core:ScoreFunctionTest:test_ScoreFunction_ctor_actually_reads_option_collection core:ScoreFunctionTest:test_ScoreFunction_list_options_read_in_sync core:ScoreFunctionTest:test_add_weights_from_file core:ScoreFunctionTest:test_apply_patch_from_file core:ScoreFunctionTest:test_get_sub_score_exclude_res core:ScoreFunctionTest:test_get_sub_score_exclude_res_long_range_terms core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success core:VoidsPenaltyVoxelGridTests_rotamer_setup:test_rotamer_setup core:VoidsPenaltyVoxelGridTests_rotamer_setup_2:test_rotamer_setup_2 protocols:AddMHCEpitopeConstraintMoverTests:test_mhc_csts protocols:ConstraintScoreCutoffFilterTests:test_it_adds_scores protocols:DdgFilter:test_filter_parsing protocols:DdgFilter:test_use_filter protocols:EnzScoreFilterTests:test_auto_enzdes_csts protocols:EnzScoreFilterTests:test_resnum_enzdes_csts protocols:EnzScoreFilterTests:test_whole_pose_enzdes_csts protocols:InvrotTreeTest:test_invrot_tree protocols:LoopAnalyzerMoverTests:test_Cterm_adjacent protocols:LoopAnalyzerMoverTests:test_Nterm_adjacent protocols:LoopAnalyzerMoverTests:test_at_Nterm protocols:LoopAnalyzerMoverTests:test_internal_termini protocols:LoopAnalyzerMoverTests:test_internal_terminiCterm protocols:LoopAnalyzerMoverTests:test_simple_loop protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:ddG:test_chains_to_move_invert protocols:ddG:test_filter_parsing_dimer protocols:ddG:test_filter_parsing_monomer protocols:ddG:test_use_filter_dimer protocols:ddG:test_use_filter_monomer