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Revisions №13997

branch: commits 「№13997」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№4310」
Merge: 「7adf0c7f0」「e4518a12d」  code diff
Scheduled at: 2019-10-23 00:35:47.762196
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug cppcheck mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels ninja graphics static linux.ui mac.ui build.xcode beautification code_quality.clang_analysis serialization integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile release.source linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release util.apps

Pull Request №4310 vmullig/multithreaded_packer_setup2←vmullig/vmullig/multithreaded_packer_setup3 Merge: 7adf0c7f04080a728375bda0d834bdc98a73ffd9←e4518a12d4a48d909b1cbce0bd7621abb7b25808 Address Andrew and Jack's current concerns about the multi-threaded interaction graph precomputation ---------------- Merge commit message: Merge branch2 into branch3 to simplify diff.

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Test: linux.clang.build.cppcheck

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AlterSpecDisruption AnchoredDesign ConsensusLoopDesign Enzrevert_xml FloppyTail InterfaceAnalyzer InterfaceAnalyzer_bothpack InterfaceAnalyzer_ligand InterfaceAnalyzer_prepack InterfaceAnalyzer_resfile KIC_refine KIC_vicinity KIC_with_fragments LayerDesign_symm LayerSelector LoopAnalyzer PeptideCyclizeMover ReadResfile_with_selector SnugDock TryDisulfPermutations UBQ_E2_thioester UBQ_E2_thioester_extra_bodies UBQ_E2_thioester_two_ubiquitins UBQ_Gp_CYD-CYD UBQ_Gp_LYX-Cterm add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup antibody_H3 antibody_H3_camelid antibody_designer antibody_designer_camelid antibody_designer_xml antibody_graft antibody_numbering_converter assemble_domains_jd2 autosetup_metals_centroid backrub backrub_interface_ddG backrub_pilot batch_relax beta_strand_homodimer bin_initialization bin_perturbation binselector binselector_probins broker_membrane bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_design bundlegridsampler_design_nstruct_mode buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans cartesianddg ccd_ends_graft_mover_rs central_class_modification classic_relax_1a19 cleanAlignment cluster_alns composition_energy_layers create_clash-based_repack_shell create_sequence_motif crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm custom_basetype_packer_palette cyclization cycpep_design_pipeline d_workflow ddG_of_mutation density_denovo density_refine density_refine_symm design_glycans design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA distances disulfidize_beta_cys dna_interface_design dock_glycans dock_with_hotspot_place_simultaneously docking_distance_constraints docking_ensemble docking_ensemble_prepack docking_full_protocol docking_local_refine docking_prepack docking_site_constraints doug_dock_design_min_mod2_cal_cal entropy_correction enumerative_sampling enzdes evolution farnesyl fast_relax favor_native_residue fiber_diffraction_fad fix_alignment_to_match_pdb fixbb flexpepdock flexpepdock_abinitio fold_and_dock fold_from_loops fuzzy ga_ligand_dock gen_apo_grids gen_lig_grids genkic_lowmemory_mode genkic_ramaprepro_sampling glycan_anomers glycan_refinment glycan_relax glycan_sequon_scanner glycan_tree_relax glycan_tree_relax_build_single glycan_tree_relax_quench glycomutagenesis hbnet hbnet_asymm hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbonds hbonds_sp2 hbs_design helical_bundle_predict helix_from_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hotspot_stub_constraints hybridization hydrate hydrate_relax identify_cdr_clusters ig_dump interaction_graph_summary_metric inv_kin_lig_loop_design jd2test_PDBIO jd2test_PDBin_mmCIFout jd2test_PDBin_mmCIFout_extra_data_separate jd2test_mmCIFIO jd2test_mmCIFin_PDBout jrelax kinematic_looprelax ligand_database_io ligand_dock_7cpa ligand_dock_ensemble ligand_dock_script ligand_motif_design ligand_water_docking loop_creation loop_modeling make_symmdef_file metal_setup metalloprotein_abrelax mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload min_pack_min mirror_symm mmtfIO_score_test motif_dna_packer_design mp_dock mp_dock_prepack mp_domain_assembly mp_domain_assembly_FtsQ mp_find_interface mp_mutate_relax mp_mutate_repack mp_quick_relax_ref2015_memb mp_range_relax mp_relax mp_span_ang_ref2015_memb mp_symdock mpi_multistate_design mr_protocols multistage_rosetta_scripts multithreaded_fastdesign multithreaded_fixbb multithreaded_interaction_graph_accuracy multithreaded_interaction_graph_accuracy_symm multithreaded_packrotamersmover mutate ncaa_fixbb ncbb_packer_palette netcharge_design netcharge_design_symm next_generation_KIC non-canonical_connectivities oligourea_design oligourea_predict oop_design oop_dock_design orbitals pH_mode pepspec_anchor_dock phiselector phosphonate place_simultaneously pmut_scan pna pocket_relax posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk pymol_cif range_relax_w_cst readin_dna_rna_protein recon_design relax_w_allatom_cst remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens repeat_relax res_lipo_ref2015_memb resource_database_locator rna_denovo_dna_bridge rna_design rna_motif rnp_ddg_calc_mut rnp_ddg_calc_wt rnp_ddg_finalize rnp_ddg_relax_command_2 rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosie_ligand_docking rotamer_probability rs_flexbbmoves score12_docking score_only_silence sdf_reader secondary_structure_output seed_ensemble_JD2_JI sequence_profile_constraints sequence_recovery sequence_tolerance simple_cycpep_predict simple_cycpep_predict_angle simple_cycpep_predict_anglelength simple_cycpep_predict_cartesian simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_design simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_setting simple_cycpep_predict_sidechain_isopeptide simple_cycpep_predict_sidechain_isopeptide_reverse simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_symmetric_sampling simple_cycpep_predict_tbmb simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_terminal_disulfide_internal_permutations simple_cycpep_predict_terminal_disulfide_tails simple_cycpep_predict_tetrahedral_metal simple_cycpep_predict_tetrahedral_metal_asp simple_cycpep_predict_tma simple_cycpep_predict_trigonal_planar_metal simple_cycpep_predict_trigonal_pyramidal_metal simple_dna_test simple_glycosylation simple_grafting_movers splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter stored_residue_subset struc_set_fragment_picker supercharge surface_docking swa_protein_loop_sampler swa_protein_prepack swm_dna_bridge swm_protein_preminimize symm_disulfidize symm_rotamer_boltzmann symmetric_docking symmetry_data_resource task_selector tcrmodel test1_benchmark threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric torsion_restricted_sampling unfolded_state_energy_calc vancomycin vip voids_penalty_energy_design voids_penalty_energy_design_symmetry zinc_heterodimer zinc_homodimer_design
Test: linux.clang.performance

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Test: linux.clang.unit.release

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltyGraphTests:test_graph_setup core:BuriedUnsatPenaltyGraphTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:CenRotModelEnergyTests:test_cen_rot_atomtree_min core:CenRotModelEnergyTests:test_cen_rot_cart_min core:CenRotModelEnergyTests:test_cen_rot_dun core:CenRotModelEnergyTests:test_cen_rot_pair_env_energy core:CenRotModelEnergyTests:test_cen_rot_repack core:CenRotModelEnergyTests:test_cen_rot_vdw core:DunbrackEnergyTests_oligourea:test_beta_aa_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs2 core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring2 core:DunbrackEnergyTests_oligourea:test_oligourea_proline_pack core:DunbrackEnergyTests_oligourea:test_oligourea_proline_score core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NCAADunbrackTests:test_score_with_ncaa core:NCAADunbrackTests_betanov15:test_score_with_ncaa core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:RotamerConstraintDun2002Tests:test_rescore_and_copy core:RotamerConstraintDun2002Tests:test_unbound_rot core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths core:SpanningTopologyTest:test_concatenate_topology core:SpanningTopologyTest:test_from_pdb1 core:SpanningTopologyTest:test_from_pdb2 core:SpanningTopologyTest:test_from_pdb3 core:SpanningTopologyTest:test_from_pdb4 core:SpanningTopologyTest:test_from_spanfile core:SpanningTopologyTest:test_is_valid core:SpanningTopologyTest:test_res_in_membrane core:SpanningTopologyTest:test_spanning_membrane core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success core:component_reading_Tests:test_load_components core:mmcif_IO:test_mmcif_input core:mmcif_IO:test_mmcif_output core:mmcif_IO:test_mmcif_vs_pdb_input core:mmcif_IO:test_multimodel_cif devel:BuildSheetTests:test_flat_sheet_grid protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm protocols:AntibodyCDRGrafterTests:test_graft_classes protocols:BetaAlphaDisulfideTests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov15_Tests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov16_Tests:test_mixed_disulf protocols:CoupledMovesProtocolTests:test_apply protocols:CoupledMovesProtocolTests:test_bad_init protocols:DockingTest:test_DockingPacking protocols:DockingTest:test_DockingProtocolFunctions protocols:DockingTest:test_DockingProtocol_clone protocols:DockingTest:test_DockingRigidBodyMinimize protocols:DockingTest:test_DockingSlideIntoContact protocols:DockingTest:test_EllipsoidalRandomizationMover protocols:FindConsensusSequenceTest:test_consensus_sequence protocols:FindConsensusSequenceTest:test_resfile_parsing protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols:MPLipidAccessibilityTest:test_parse_my_tag_input protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:NMethylationTests:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov15:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide protocols:NubInitioLoopClosureMoverTests:test_labeled_closed protocols:NubInitioLoopClosureMoverTests:test_labeled_open protocols:NubInitioLoopClosureMoverTests:test_name protocols:NubInitioLoopClosureMoverTests:test_not_labeled protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:PDBPoseOutputterTests:test_mmTF_output protocols:PDBPoseOutputterTests:test_output_path_handling_1 protocols:PDBPoseOutputterTests:test_output_path_handling_2 protocols:PDBPoseOutputterTests:test_output_path_handling_3 protocols:PDBPoseOutputterTests:test_output_path_handling_4 protocols:PDBPoseOutputterTests:test_output_path_handling_prefix_suffix protocols:PDBPoseOutputterTests:test_output_path_handling_priority_1 protocols:PDBPoseOutputterTests:test_output_path_tag_dir protocols:PDBPoseOutputterTests:test_output_path_tag_prefix_suffix protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RotamerBoltzmannWeight2Tests:test_calculator_ids protocols:RotamerBoltzmannWeight2Tests:test_rbw2_vs_rbw protocols:SimpleThreadingMoverTests:test_basic_class protocols:ThreadingMover_Tests:test_basic_threading protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding_and_membrane protocols:TransformIntoMembraneMoverTest:test_helix_to_normal_angle protocols:TransformIntoMembraneMoverTest:test_transform_into_default_membrane protocols:TransformIntoMembraneMoverTest:test_transform_into_userdefined_membrane
Test: linux.gcc.unit.release

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltyGraphTests:test_graph_setup core:BuriedUnsatPenaltyGraphTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:CenRotModelEnergyTests:test_cen_rot_atomtree_min core:CenRotModelEnergyTests:test_cen_rot_cart_min core:CenRotModelEnergyTests:test_cen_rot_dun core:CenRotModelEnergyTests:test_cen_rot_pair_env_energy core:CenRotModelEnergyTests:test_cen_rot_repack core:CenRotModelEnergyTests:test_cen_rot_vdw core:DunbrackEnergyTests_oligourea:test_beta_aa_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs2 core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring2 core:DunbrackEnergyTests_oligourea:test_oligourea_proline_pack core:DunbrackEnergyTests_oligourea:test_oligourea_proline_score core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NCAADunbrackTests:test_score_with_ncaa core:NCAADunbrackTests_betanov15:test_score_with_ncaa core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:RotamerConstraintDun2002Tests:test_rescore_and_copy core:RotamerConstraintDun2002Tests:test_unbound_rot core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths core:SpanningTopologyTest:test_concatenate_topology core:SpanningTopologyTest:test_from_pdb1 core:SpanningTopologyTest:test_from_pdb2 core:SpanningTopologyTest:test_from_pdb3 core:SpanningTopologyTest:test_from_pdb4 core:SpanningTopologyTest:test_from_spanfile core:SpanningTopologyTest:test_is_valid core:SpanningTopologyTest:test_res_in_membrane core:SpanningTopologyTest:test_spanning_membrane core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success core:component_reading_Tests:test_load_components core:mmcif_IO:test_mmcif_input core:mmcif_IO:test_mmcif_output core:mmcif_IO:test_mmcif_vs_pdb_input core:mmcif_IO:test_multimodel_cif devel:BuildSheetTests:test_flat_sheet_grid protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm protocols:AntibodyCDRGrafterTests:test_graft_classes protocols:BetaAlphaDisulfideTests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov15_Tests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov16_Tests:test_mixed_disulf protocols:CoupledMovesProtocolTests:test_apply protocols:CoupledMovesProtocolTests:test_bad_init protocols:DockingTest:test_DockingPacking protocols:DockingTest:test_DockingProtocolFunctions protocols:DockingTest:test_DockingProtocol_clone protocols:DockingTest:test_DockingRigidBodyMinimize protocols:DockingTest:test_DockingSlideIntoContact protocols:DockingTest:test_EllipsoidalRandomizationMover protocols:FindConsensusSequenceTest:test_consensus_sequence protocols:FindConsensusSequenceTest:test_resfile_parsing protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols:MPLipidAccessibilityTest:test_parse_my_tag_input protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:NMethylationTests:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov15:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide protocols:NubInitioLoopClosureMoverTests:test_labeled_closed protocols:NubInitioLoopClosureMoverTests:test_labeled_open protocols:NubInitioLoopClosureMoverTests:test_name protocols:NubInitioLoopClosureMoverTests:test_not_labeled protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:PDBPoseOutputterTests:test_mmTF_output protocols:PDBPoseOutputterTests:test_output_path_handling_1 protocols:PDBPoseOutputterTests:test_output_path_handling_2 protocols:PDBPoseOutputterTests:test_output_path_handling_3 protocols:PDBPoseOutputterTests:test_output_path_handling_4 protocols:PDBPoseOutputterTests:test_output_path_handling_prefix_suffix protocols:PDBPoseOutputterTests:test_output_path_handling_priority_1 protocols:PDBPoseOutputterTests:test_output_path_tag_dir protocols:PDBPoseOutputterTests:test_output_path_tag_prefix_suffix protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RotamerBoltzmannWeight2Tests:test_calculator_ids protocols:RotamerBoltzmannWeight2Tests:test_rbw2_vs_rbw protocols:SimpleThreadingMoverTests:test_basic_class protocols:ThreadingMover_Tests:test_basic_threading protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding_and_membrane protocols:TransformIntoMembraneMoverTest:test_helix_to_normal_angle protocols:TransformIntoMembraneMoverTest:test_transform_into_default_membrane protocols:TransformIntoMembraneMoverTest:test_transform_into_userdefined_membrane
Test: linux.clang.unit

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltyGraphTests:test_graph_setup core:BuriedUnsatPenaltyGraphTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:CenRotModelEnergyTests:test_cen_rot_atomtree_min core:CenRotModelEnergyTests:test_cen_rot_cart_min core:CenRotModelEnergyTests:test_cen_rot_dun core:CenRotModelEnergyTests:test_cen_rot_pair_env_energy core:CenRotModelEnergyTests:test_cen_rot_repack core:CenRotModelEnergyTests:test_cen_rot_vdw core:DunbrackEnergyTests_oligourea:test_beta_aa_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs2 core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring2 core:DunbrackEnergyTests_oligourea:test_oligourea_proline_pack core:DunbrackEnergyTests_oligourea:test_oligourea_proline_score core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NCAADunbrackTests:test_score_with_ncaa core:NCAADunbrackTests_betanov15:test_score_with_ncaa core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:RotamerConstraintDun2002Tests:test_rescore_and_copy core:RotamerConstraintDun2002Tests:test_unbound_rot core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths core:SpanningTopologyTest:test_concatenate_topology core:SpanningTopologyTest:test_from_pdb1 core:SpanningTopologyTest:test_from_pdb2 core:SpanningTopologyTest:test_from_pdb3 core:SpanningTopologyTest:test_from_pdb4 core:SpanningTopologyTest:test_from_spanfile core:SpanningTopologyTest:test_is_valid core:SpanningTopologyTest:test_res_in_membrane core:SpanningTopologyTest:test_spanning_membrane core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success core:component_reading_Tests:test_load_components core:mmcif_IO:test_mmcif_input core:mmcif_IO:test_mmcif_output core:mmcif_IO:test_mmcif_vs_pdb_input core:mmcif_IO:test_multimodel_cif devel:BuildSheetTests:test_flat_sheet_grid protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm protocols:AntibodyCDRGrafterTests:test_graft_classes protocols:BetaAlphaDisulfideTests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov15_Tests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov16_Tests:test_mixed_disulf protocols:CoupledMovesProtocolTests:test_apply protocols:CoupledMovesProtocolTests:test_bad_init protocols:DockingTest:test_DockingPacking protocols:DockingTest:test_DockingProtocolFunctions protocols:DockingTest:test_DockingProtocol_clone protocols:DockingTest:test_DockingRigidBodyMinimize protocols:DockingTest:test_DockingSlideIntoContact protocols:DockingTest:test_EllipsoidalRandomizationMover protocols:FindConsensusSequenceTest:test_consensus_sequence protocols:FindConsensusSequenceTest:test_resfile_parsing protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols:MPLipidAccessibilityTest:test_parse_my_tag_input protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:NMethylationTests:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov15:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide protocols:NubInitioLoopClosureMoverTests:test_labeled_closed protocols:NubInitioLoopClosureMoverTests:test_labeled_open protocols:NubInitioLoopClosureMoverTests:test_name protocols:NubInitioLoopClosureMoverTests:test_not_labeled protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:PDBPoseOutputterTests:test_mmTF_output protocols:PDBPoseOutputterTests:test_output_path_handling_1 protocols:PDBPoseOutputterTests:test_output_path_handling_2 protocols:PDBPoseOutputterTests:test_output_path_handling_3 protocols:PDBPoseOutputterTests:test_output_path_handling_4 protocols:PDBPoseOutputterTests:test_output_path_handling_prefix_suffix protocols:PDBPoseOutputterTests:test_output_path_handling_priority_1 protocols:PDBPoseOutputterTests:test_output_path_tag_dir protocols:PDBPoseOutputterTests:test_output_path_tag_prefix_suffix protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RotamerBoltzmannWeight2Tests:test_calculator_ids protocols:RotamerBoltzmannWeight2Tests:test_rbw2_vs_rbw protocols:SimpleThreadingMoverTests:test_basic_class protocols:ThreadingMover_Tests:test_basic_threading protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding_and_membrane protocols:TransformIntoMembraneMoverTest:test_helix_to_normal_angle protocols:TransformIntoMembraneMoverTest:test_transform_into_default_membrane protocols:TransformIntoMembraneMoverTest:test_transform_into_userdefined_membrane
Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltyGraphTests:test_graph_setup core:BuriedUnsatPenaltyGraphTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:CenRotModelEnergyTests:test_cen_rot_atomtree_min core:CenRotModelEnergyTests:test_cen_rot_cart_min core:CenRotModelEnergyTests:test_cen_rot_dun core:CenRotModelEnergyTests:test_cen_rot_pair_env_energy core:CenRotModelEnergyTests:test_cen_rot_repack core:CenRotModelEnergyTests:test_cen_rot_vdw core:DunbrackEnergyTests_oligourea:test_beta_aa_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs2 core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring2 core:DunbrackEnergyTests_oligourea:test_oligourea_proline_pack core:DunbrackEnergyTests_oligourea:test_oligourea_proline_score core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NCAADunbrackTests:test_score_with_ncaa core:NCAADunbrackTests_betanov15:test_score_with_ncaa core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:RotamerConstraintDun2002Tests:test_rescore_and_copy core:RotamerConstraintDun2002Tests:test_unbound_rot core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths core:SpanningTopologyTest:test_concatenate_topology core:SpanningTopologyTest:test_from_pdb1 core:SpanningTopologyTest:test_from_pdb2 core:SpanningTopologyTest:test_from_pdb3 core:SpanningTopologyTest:test_from_pdb4 core:SpanningTopologyTest:test_from_spanfile core:SpanningTopologyTest:test_is_valid core:SpanningTopologyTest:test_res_in_membrane core:SpanningTopologyTest:test_spanning_membrane core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success core:component_reading_Tests:test_load_components core:mmcif_IO:test_mmcif_input core:mmcif_IO:test_mmcif_output core:mmcif_IO:test_mmcif_vs_pdb_input core:mmcif_IO:test_multimodel_cif devel:BuildSheetTests:test_flat_sheet_grid protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm protocols:AntibodyCDRGrafterTests:test_graft_classes protocols:BetaAlphaDisulfideTests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov15_Tests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov16_Tests:test_mixed_disulf protocols:CoupledMovesProtocolTests:test_apply protocols:CoupledMovesProtocolTests:test_bad_init protocols:DdGScan:test_calculate protocols:DdGScan:test_filter_parsing protocols:DdgFilter:test_filter_parsing protocols:DdgFilter:test_use_filter protocols:DockingTest:test_DockingPacking protocols:DockingTest:test_DockingProtocolFunctions protocols:DockingTest:test_DockingProtocol_clone protocols:DockingTest:test_DockingRigidBodyMinimize protocols:DockingTest:test_DockingSlideIntoContact protocols:DockingTest:test_EllipsoidalRandomizationMover protocols:FindConsensusSequenceTest:test_consensus_sequence protocols:FindConsensusSequenceTest:test_resfile_parsing protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols:MPLipidAccessibilityTest:test_parse_my_tag_input protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:NMethylationTests:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov15:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide protocols:NubInitioLoopClosureMoverTests:test_labeled_closed protocols:NubInitioLoopClosureMoverTests:test_labeled_open protocols:NubInitioLoopClosureMoverTests:test_name protocols:NubInitioLoopClosureMoverTests:test_not_labeled protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:PDBPoseOutputterTests:test_mmTF_output protocols:PDBPoseOutputterTests:test_output_path_handling_1 protocols:PDBPoseOutputterTests:test_output_path_handling_2 protocols:PDBPoseOutputterTests:test_output_path_handling_3 protocols:PDBPoseOutputterTests:test_output_path_handling_4 protocols:PDBPoseOutputterTests:test_output_path_handling_prefix_suffix protocols:PDBPoseOutputterTests:test_output_path_handling_priority_1 protocols:PDBPoseOutputterTests:test_output_path_tag_dir protocols:PDBPoseOutputterTests:test_output_path_tag_prefix_suffix protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RotamerBoltzmannWeight2Tests:test_calculator_ids protocols:RotamerBoltzmannWeight2Tests:test_rbw2_vs_rbw protocols:SimpleThreadingMoverTests:test_basic_class protocols:ThreadingMover_Tests:test_basic_threading protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding_and_membrane protocols:TransformIntoMembraneMoverTest:test_helix_to_normal_angle protocols:TransformIntoMembraneMoverTest:test_transform_into_default_membrane protocols:TransformIntoMembraneMoverTest:test_transform_into_userdefined_membrane protocols:ddG:test_chains_to_move_invert protocols:ddG:test_filter_parsing_dimer protocols:ddG:test_filter_parsing_monomer protocols:ddG:test_use_filter_dimer protocols:ddG:test_use_filter_monomer
Test: linux.gcc.unit

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltyGraphTests:test_graph_setup core:BuriedUnsatPenaltyGraphTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:CenRotModelEnergyTests:test_cen_rot_atomtree_min core:CenRotModelEnergyTests:test_cen_rot_cart_min core:CenRotModelEnergyTests:test_cen_rot_dun core:CenRotModelEnergyTests:test_cen_rot_pair_env_energy core:CenRotModelEnergyTests:test_cen_rot_repack core:CenRotModelEnergyTests:test_cen_rot_vdw core:DunbrackEnergyTests_oligourea:test_beta_aa_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_derivs2 core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring core:DunbrackEnergyTests_oligourea:test_oligourea_dunbrack_scoring2 core:DunbrackEnergyTests_oligourea:test_oligourea_proline_pack core:DunbrackEnergyTests_oligourea:test_oligourea_proline_score core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NCAADunbrackTests:test_score_with_ncaa core:NCAADunbrackTests_betanov15:test_score_with_ncaa core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PeptoidDesignTests:test_design_001_601_602 core:PeptoidDesignTests:test_design_hydrophobic_aa_001_601_602 core:RotamerConstraintDun2002Tests:test_rescore_and_copy core:RotamerConstraintDun2002Tests:test_unbound_rot core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing_cli core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_unequal_chain_lengths core:SpanningTopologyTest:test_concatenate_topology core:SpanningTopologyTest:test_from_pdb1 core:SpanningTopologyTest:test_from_pdb2 core:SpanningTopologyTest:test_from_pdb3 core:SpanningTopologyTest:test_from_pdb4 core:SpanningTopologyTest:test_from_spanfile core:SpanningTopologyTest:test_is_valid core:SpanningTopologyTest:test_res_in_membrane core:SpanningTopologyTest:test_spanning_membrane core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success core:component_reading_Tests:test_load_components core:mmcif_IO:test_mmcif_input core:mmcif_IO:test_mmcif_output core:mmcif_IO:test_mmcif_vs_pdb_input core:mmcif_IO:test_multimodel_cif devel:BuildSheetTests:test_flat_sheet_grid protocols:AddHelixSequenceConstraintsMoverTests:test_detect_helices protocols:AddHelixSequenceConstraintsMoverTests:test_limit_ala protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val protocols:AddHelixSequenceConstraintsMoverTests:test_limit_val_by_hydrophobicity protocols:AddHelixSequenceConstraintsMoverTests:test_negative_nterm protocols:AddHelixSequenceConstraintsMoverTests:test_positive_cterm protocols:AntibodyCDRGrafterTests:test_graft_classes protocols:BetaAlphaDisulfideTests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov15_Tests:test_mixed_disulf protocols:BetaAlphaDisulfide_betanov16_Tests:test_mixed_disulf protocols:CoupledMovesProtocolTests:test_apply protocols:CoupledMovesProtocolTests:test_bad_init protocols:DockingTest:test_DockingPacking protocols:DockingTest:test_DockingProtocolFunctions protocols:DockingTest:test_DockingProtocol_clone protocols:DockingTest:test_DockingRigidBodyMinimize protocols:DockingTest:test_DockingSlideIntoContact protocols:DockingTest:test_EllipsoidalRandomizationMover protocols:FindConsensusSequenceTest:test_consensus_sequence protocols:FindConsensusSequenceTest:test_resfile_parsing protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:MPLipidAccessibilityTest:test_mp_lipid_accessibility protocols:MPLipidAccessibilityTest:test_parse_my_tag_input protocols:MembraneUtil:test_angle_rmsd_method protocols:MembraneUtil:test_average_antiparallel_embeddings protocols:MembraneUtil:test_average_embeddings protocols:MembraneUtil:test_calc_helix_angles protocols:MembraneUtil:test_calc_helix_axis protocols:MembraneUtil:test_chain_com protocols:MembraneUtil:test_check_vector protocols:MembraneUtil:test_compute_embeddings_by_chain protocols:MembraneUtil:test_compute_structure_based_embedding1 protocols:MembraneUtil:test_compute_structure_based_embedding2 protocols:MembraneUtil:test_compute_structure_based_embedding3 protocols:MembraneUtil:test_compute_structure_based_embedding4 protocols:MembraneUtil:test_compute_structure_based_embedding5 protocols:MembraneUtil:test_compute_structure_based_embedding6 protocols:MembraneUtil:test_compute_structure_based_embedding7 protocols:MembraneUtil:test_compute_structure_based_embedding8 protocols:MembraneUtil:test_create_membrane_docking_foldtree_from_partners protocols:MembraneUtil:test_create_membrane_foldtree_anchor_com protocols:MembraneUtil:test_create_membrane_foldtree_anchor_pose_tmcom protocols:MembraneUtil:test_create_membrane_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_membrane_multi_partner_foldtree_anchor_tmcom protocols:MembraneUtil:test_create_specific_membrane_foldtree protocols:MembraneUtil:test_is_fixed_on_fixed_memb protocols:MembraneUtil:test_is_fixed_on_moveable_memb protocols:MembraneUtil:test_is_independently_moveable_on_fixed_memb protocols:MembraneUtil:test_is_independently_moveable_on_independently_moveable_memb protocols:MembraneUtil:test_membrane_bb_rmsd_no_super protocols:MembraneUtil:test_membrane_bb_rmsd_no_super_allatom protocols:MembraneUtil:test_membrane_bb_rmsd_with_super protocols:MembraneUtil:test_membrane_bb_rmsd_with_super_allatom protocols:MembraneUtil:test_pose_tm_COM protocols:MembraneUtil:test_rsd_closest_chain_com protocols:MembraneUtil:test_rsd_closest_chain_tm_com protocols:MembraneUtil:test_rsd_closest_pose_tm_COM protocols:MembraneUtil:test_split_topology_by_chain_noshift protocols:MembraneUtil:test_split_topology_by_jump protocols:MembraneUtil:test_split_topology_by_jump_noshift protocols:MembraneUtil:test_tm_com protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:NMethylationTests:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov15:test_linear_nmethyl_peptide protocols:NMethylationTests_betanov16:test_linear_nmethyl_peptide protocols:NubInitioLoopClosureMoverTests:test_labeled_closed protocols:NubInitioLoopClosureMoverTests:test_labeled_open protocols:NubInitioLoopClosureMoverTests:test_name protocols:NubInitioLoopClosureMoverTests:test_not_labeled protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:PDBPoseOutputterTests:test_mmTF_output protocols:PDBPoseOutputterTests:test_output_path_handling_1 protocols:PDBPoseOutputterTests:test_output_path_handling_2 protocols:PDBPoseOutputterTests:test_output_path_handling_3 protocols:PDBPoseOutputterTests:test_output_path_handling_4 protocols:PDBPoseOutputterTests:test_output_path_handling_prefix_suffix protocols:PDBPoseOutputterTests:test_output_path_handling_priority_1 protocols:PDBPoseOutputterTests:test_output_path_tag_dir protocols:PDBPoseOutputterTests:test_output_path_tag_prefix_suffix protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RotamerBoltzmannWeight2Tests:test_calculator_ids protocols:RotamerBoltzmannWeight2Tests:test_rbw2_vs_rbw protocols:SimpleThreadingMoverTests:test_basic_class protocols:ThreadingMover_Tests:test_basic_threading protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding protocols:TransformIntoMembraneMoverTest:test_constructor_from_embedding_and_membrane protocols:TransformIntoMembraneMoverTest:test_helix_to_normal_angle protocols:TransformIntoMembraneMoverTest:test_transform_into_default_membrane protocols:TransformIntoMembraneMoverTest:test_transform_into_userdefined_membrane