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branch: commits 「№20150」
Commited by: gfzhou
GitHub commit link: 「ba1a794882dab4a1」
Commit date: 2023-08-18 19:52:39
beautification code_quality.beautify

Merge branch 'master' of github.com:RosettaCommons/main into guangfeng/galiganddock_vsx_update

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Test: linux.gcc.code_quality.beautification

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branch: commits 「№20149」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「7af9683a7」  code diff
Scheduled at: 2023-08-16 06:19:39.777443
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←7af9683a755f1844c559f4e60202e18bc8ba6259 Carbohydrates: Adding chlorination ---------------- Merge commit message: Comment out "Property Aldose

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branch: commits 「№20148」
Commited by: hochshi
GitHub commit link: 「0ad4f51516c8d580」
Commit date: 2023-08-15 14:56:23
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python310.PyRosetta.unit mac.clang.python38.PyRosetta.unit mac.clang.python39.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug graphics static beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify windows.build.debug windows.build.release

Performance improvments

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Test: linux.clang.cxx11thread.serialization.python37.PyRosetta.unit

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Test: linux.gcc.cxx11thread.serialization.build.debug

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Test: linux.gcc.mpi.serialization.build.debug

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Test: linux.gcc.code_quality.beautification

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Test: linux.gcc.mpi.serialization.integration.mpi

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
KIC_with_fragments SnugDock antibody_H3 antibody_H3_camelid antibody_designer assemble_domains_jd2 beta_strand_homodimer cartesianddg crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar_c3_symm cyclization ddG_ensemble density_refine density_refine_symm docking_distance_constraints energy_based_clustering_alpha_aa_scorefile erraser_minimize evolution farnesyl features fold_cst_new ga_ligand_dock ga_ligand_dock_amino_acid ga_ligand_dock_macrocycle glycan_tree_relax glycopeptidedocking_diglyco_long helical_bundle_predict_sequence homodimer_fnd_ref2015_memb hotspot_graft hotspot_hashing hybridization hydrate_relax iphold kinematic_looprelax ligand_dock_cholesterol loop_grower_N_term_symm loop_modeling make_mainchain_potential make_rot_lib mirror_symm mixed_monte_carlo mp_dock mp_dock_ensemble mp_find_interface mp_relax mr_protocols next_generation_KIC oligourea_design output_schema rna_assemble rna_denovo_bps rna_denovo_bps_fixed_ends rna_denovo_bps_helix_ends rna_denovo_lariat rna_denovo_new_libs rnp_ddg_calc_mut rosetta_scripts_loops simple_cycpep_predict_angle simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_terminal_disulfide simple_cycpep_predict_tma simple_glycosylation simple_metrics simple_metrics_in_protocols surface_docking swa_rna_erraser swa_rna_gagu_09_sample_virtual_ribose swm_dna_loop swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_srl_triplet thermal_sampler threefold_symm_peptide_design torsion_restricted_sampling vancomycin zinc_homodimer_design
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
KIC_with_fragments SnugDock antibody_H3 antibody_H3_camelid assemble_domains_jd2 beta_strand_homodimer bridge_chains cartesianddg crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar_c3_symm cyclization density_refine density_refine_symm docking_distance_constraints energy_based_clustering_alpha_aa_scorefile erraser_minimize evolution features fold_cst_new fold_from_loops ga_ligand_dock_amino_acid ga_ligand_dock_macrocycle glycan_tree_relax hotspot_graft hotspot_hashing hybridization hydrate_relax jrelax kinematic_looprelax ligand_dock_cholesterol loop_modeling make_mainchain_potential make_rot_lib mirror_symm mixed_monte_carlo mp_dock mp_dock_ensemble mp_find_interface mp_relax_w_ligand mr_protocols next_generation_KIC oligourea_design output_schema pepspec polyaramid_test_trivial remodel rna_assemble rna_denovo_bps rna_denovo_fragment_homology_exclusion rna_denovo_lariat rna_denovo_new_FT_2in_dens rnp_ddg_calc_mut rosetta_scripts_loops simple_cycpep_predict_angle simple_cycpep_predict_cispro simple_cycpep_predict_cterm_isopeptide_lariat_tailless simple_cycpep_predict_nmethyl simple_cycpep_predict_nterm_isopeptide_lariat simple_cycpep_predict_nterm_isopeptide_lariat_tailless simple_cycpep_predict_octahedral_metal simple_cycpep_predict_peptoid simple_cycpep_predict_square_planar_metal simple_cycpep_predict_square_pyramidal_metal simple_cycpep_predict_symm_gly simple_cycpep_predict_terminal_disulfide simple_metrics_in_protocols surface_docking swa_rna_erraser swa_rna_gagu_09_sample_virtual_ribose swm_dna_loop swm_protein_move_inside_coiledcoil_by_bond swm_protein_move_inside_helix_by_bond swm_rna_base_pair_constraints swm_rna_srl_triplet thermal_sampler threefold_symm_peptide_design torsion_restricted_sampling vancomycin zinc_homodimer_design
Test: linux.clang.performance

Failed sub-tests (click for more details):
instantiate_modules_packer_palettes
Test: linux.gcc.cxx11thread.serialization.unit

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Test: windows.cl.windows.build.debug

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Test: windows.cl.windows.build.release

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branch: commits 「№20147」
Commited by: Labonte
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「6a7e47df8」  code diff
Scheduled at: 2023-08-14 13:16:48.167665
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←6a7e47df8896d9d6e3ed73d72ecc86ea6d07d076 Carbohydrates: Adding chlorination ---------------- Merge commit message: Glc needs a main-chain designation, since the default, 4, is chlorinated in this case

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branch: commits 「№20146」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「d9cbba826」  code diff
Scheduled at: 2023-08-14 05:31:18.066754
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←d9cbba826d7cbbdb3aa58519eeb4f5c8f4a61e8f Carbohydrates: Adding chlorination ---------------- Merge commit message: edited residue

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branch: commits 「№20145」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「ee165555f」  code diff
Scheduled at: 2023-08-14 00:53:50.212129
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←ee165555f7fee18487ab6b828de251d15474e1a7 Carbohydrates: Adding chlorination ---------------- Merge commit message: fixed Cl typo

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branch: commits 「№20144」
Commited by: Vikram K. Mulligan
GitHub Pull Request link: 「№6421」
Merge: 「ae6119200」← 「c9f2c9786」  code diff
Scheduled at: 2023-08-10 13:40:18.975473
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №6421 master←vmullig/update_layer_selector_xsd Merge: ae61192003cc8580daf2bc1ae9607383b2866007←c9f2c9786f45c6dfb0d3a329b1e622be430a1f00 Update the XSD for the Layer selector ---------------- Merge commit message: Switch "neighbour" to "neighbor" again. Grr. Why does the US have to be different than the other 66 English-speaking countries in the world?

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking


branch: commits 「№20143」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「60d16a69d」  code diff
Scheduled at: 2023-08-09 03:37:19.048644
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←60d16a69da15d48e404d7adf91bccfdeb5ff4aa5 Carbohydrates: Adding chlorination ---------------- Merge commit message: Declared missing variable

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branch: commits 「№20142」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「f2eba0b64」  code diff
Scheduled at: 2023-08-09 03:17:44.606432
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←f2eba0b64c17b744c26efc02360d2f49ccace161 Carbohydrates: Adding chlorination ---------------- Merge commit message: Adding Sucralose test

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Test: gcc-9.gcc.build.debug

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Test: linux.clang.build.debug

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Test: mac.clang.build.debug

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Test: linux.clang.integration.release_debug_no_symbols

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Test: mac.clang.python39.integration

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Test: gcc-9.gcc.unit

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Test: linux.clang.unit

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Test: m1.clang.python39.unit

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Test: mac.clang.unit

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branch: commits 「№20141」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「f32e677b5」  code diff
Scheduled at: 2023-08-09 01:08:30.477240
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←f32e677b56c9583daa5abdb69e1a7f1277ee6fda Carbohydrates: Adding chlorination ---------------- Merge commit message: Sucrose test

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branch: commits 「№20140」
Commited by: Angel-Marie Cassell
GitHub Pull Request link: 「№6410」
Merge: 「be9206938」← 「ef819a4e4」  code diff
Scheduled at: 2023-08-09 01:02:33.917413
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
gcc-9.gcc.build.debug integration.release_debug integration gcc-9.gcc.unit m1.clang.python39.unit

Pull Request №6410 master←acassell1/Chlorination-1 Merge: be92069389921d63b734b63c5a8e58bff55c97df←ef819a4e4f8d48777eb08452561ff2d93de44d53 Carbohydrates: Adding chlorination ---------------- Merge commit message: Test for Sucrose

Rosetta Benchmark 8 months
Tests for this revision was automatically canceled because newer set of tests for pull-request №6410 was submitted!
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Test: gcc-9.gcc.build.debug

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Test: linux.clang.build.debug

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Test: mac.clang.build.debug

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Test: linux.clang.integration.release_debug_no_symbols

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Test: gcc-9.gcc.unit

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Test: linux.clang.unit

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Test: m1.clang.python39.unit

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branch: commits 「№20139」
Commited by: gfzhou
GitHub Pull Request link: 「№6419」
Merge: 「ae6119200」← 「196c6619f」  code diff
Scheduled at: 2023-08-06 00:23:13.505137
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №6419 master←guangfeng/galiganddock_vsx_update Merge: ae61192003cc8580daf2bc1ae9607383b2866007←196c6619f31e30ea1377ded3b50cac4bcee83c3d GALigandDock update ---------------- Merge commit message: remove the constraints added in contraint relax

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Test: linux.gcc.mpi.serialization.integration.mpi

Failed sub-tests (click for more details):
replica_docking


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