Merge pull request #1362 from RosettaCommons/vmullig/move_fastdesign
Moving FastDesign from devel to protocols.
FastDesign is very widely used, and is pretty feature-complete (I don't think anyone is developing it much), but it has been sitting in devel for some time. I want to write a protocols-level algorithm that invokes it, but can't as long as it's in devel, so I'm going to move this to protocols.
Tom Linsky has also gone through this and cleaned up the FastDesign code a bit, removing some extraneous stuff.