Merge pull request #632 from RosettaCommons/JWLabonte/sugars/docking
Minimizer: Carbohydrate virtual atoms now ignored by the minimizer
This merge will fix a frequent bug that occurred when the minimizer tried to move virtual atoms present in carbohydrate Residues. No body will care except for me.
Also included are personal pilot app. changes and a minor tweak to some pose metric output to use tracers instead of cout. This tweak results in 11 integration tests differences that are output-only. All unit tests pass.