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Revisions №57518

branch: master 「№57518」
Commited by: jkleman
GitHub commit link: 「a28f972f7ad965e0」 「№228」
Difference from previous tested commit:  code diff
Commit date: 2014-12-18 19:46:39

Merge pull request #228 from RosettaCommons/jkleman/mp_updates MP_UPDATES: * compute_structure_based_membrane_position: makes sure the embeddings show in positive z direction * EmbeddingDef: = constructor now takes a boolean whether the embeddings should show in positive z direction = implemented invert function that inverts the normal * Embedding: = constructor from pose and topology makes sure total embedding normal always shows in positive z direction = implemented invert function that inverts the normals of all EmbeddingDefs * AddMembraneMover: = debug check_pdb_for_mem to read in MEM in PDB file; it now goes through every residue in the pose to identify the MEM residue and matches that up with the user input; this means that reading in a membrane residue from the commandline works now * Types: = created core/conformation/membrane/types file that contains all membrane default values = replaced (hopefully) all instances with the default values in types * moved membrane_axis from docking into protocols3/membrane/geometry/util * MEM.params: = for fullatom, changed normal to length 15 * Conformation: = update_membrane_position now normalizes first and sets the points from the vectors - this is correct behavior: this function should now always be called with the vector for the normal and not with the point Unit tests: pass Integration tests: expected changes

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