Merge pull request #231 from RosettaCommons/rfalford12/membrane_symdock_updates
Updates to membrane symmetric docking protocol
= Add single membrane residue at the root of the symmetry fold tree
= Adding method to compute the spanning topology of the full symmetric complex (compared to the asymmetric unit)
= Updating pilot app to correctly configure the membrane residue and MembraneInfo for symmetry
= Adding additional settings to membrane symmetric docking protocol to bypass filters, use REP criteria for side into contact
and verify alignment of symmetry axis with the membrane normal
Test Status
= Integration test changes - expected
= unit tests - all pass