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Revisions №56986

branch: master 「№56986」
Commited by: Vikram K. Mulligan
GitHub commit link: 「91cb4665dbd0bee7」
Difference from previous tested commit:  code diff
Commit date: 2014-06-26 02:10:50

Merging vmullig/cycpep into master. This tweaks GeneralizedKIC a bit, as well as fixing a problem in setting the position of atoms dependent on non-polymer connections on PDB import. (This might fix the problem with the UBQ_E2_thioester_extra_bodies and UBQ_E2_thioester_two_ubiquitins integration tests on the test server -- I'm not sure. I haven't been able to reproduce that failure.) Unit test status: All pass except the two that have been failing (protocols:DdgFilter:test_filter_parsing and protocols:DdgFilter:test_use_filter) Integration test status: No changed tests; two were already failing (app_exception_handling and buried_unsat_kinemage). As mentioned, the UBQ tests that fail on the test server don't fail when I run the integration tests. Changes to be committed: (use "git reset HEAD <file>..." to unstage) modified: source/src/core/chemical/AtomICoor.cc modified: source/src/core/chemical/AtomICoor.hh modified: source/src/core/conformation/Conformation.cc modified: source/src/protocols/generalized_kinematic_closure/GeneralizedKIC.cc modified: source/src/protocols/generalized_kinematic_closure/util.cc

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