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Revisions №61753

branch: master 「№61753」
Commited by: Vikram K. Mulligan
GitHub commit link: 「28d4aa0ee0004549」 「№5596」
Difference from previous tested commit:  code diff
Commit date: 2021-09-14 03:33:16
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-11.gcc.python39.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration maintenance.documentation performance profile linux.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel release.PyRosetta4.Release release.source scientific.antibody_h3_modeling scientific.docking_ensemble.debug scientific.glycan_dock scientific.protein_data_bank_diagnostic.cif scientific.protein_data_bank_diagnostic.full scientific.sb_talaris13_docking linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release unit.ubsan gcc-10.gcc.unit gcc-11.gcc.python39.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5596 from RosettaCommons/vmullig/fix_single_residue_helix_error Fix spurious error in helical_bundle_predict when PsiPred predicts a single isolated residue of helix. The `helical_bundle_predict` application was being a bit too strict in its checks when new helices were defined. One check was producing an error if the last residue index of the helix was not strictly greater than the first residue index. This is unnecessarily strict since the rest of the code tolerates one-residue helices just fine: if extension beyond the defined helices is allowed, then nucleation at a single residue of helix produces one turn of helix (four helical residues), and if extension is _not_ allowed, then nucleation fails but the program continues on happily. Since PsiPred sometimes predicts a single residue to be helical, this check was creating spurious errors in a lot of structure prediction attempts. This pull request relaxes the check, so that now it checks that the end residue index is greater than _or equal to_ the start residue index in a helix. This also updates the documentation submodule to point to the latest master of the documentation repo.

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Test: linux.clang.scientific.protein_data_bank_diagnostic.full

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