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Revisions №61725

branch: master 「№61725」
Commited by: Rocco Moretti
GitHub commit link: 「6be42b125ee620b6」 「№5463」
Difference from previous tested commit:  code diff
Commit date: 2021-08-02 12:45:38
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
PyRosetta4.notebook gcc-9.gcc.python37.PyRosetta4.unit linux.clang.cxx11thread.serialization.python37.PyRosetta4.unit linux.gcc.python36.PyRosetta4.unit mac.PyRosetta.unit build.clean.debug alpine.gcc.build.debug clang-10.clang.cxx11thread.mpi.serialization.tensorflow.build.debug gcc-10.gcc.build.debug gcc-9.gcc.build.debug linux.clang.hdf5.build.debug mysql postgres linux.clang.python36.build.debug linux.zeromq.debug mpi mpi.serialization linux.icc.build.debug OpenCL mac.clang.python36.build.debug build.header build.levels build.ninja_debug graphics static mac.clang.static.build.release beautification code_quality.clang_analysis code_quality.clang_tidy code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.addsan integration.mpi integration.release_debug integration.tensorflow integration.thread integration.tutorials integration.ubsan integration.valgrind integration maintenance.documentation performance profile linux.clang.python27.release.PyRosetta4.Debug linux.clang.python36.release.PyRosetta4.Debug linux.clang.python37.release.PyRosetta4.Debug linux.clang.python38.release.PyRosetta4.Debug linux.clang.python39.release.PyRosetta4.Debug linux.clang.python27.release.PyRosetta4.MinSizeRel linux.clang.python36.release.PyRosetta4.MinSizeRel linux.clang.python37.release.PyRosetta4.MinSizeRel linux.clang.python38.release.PyRosetta4.MinSizeRel linux.clang.python39.release.PyRosetta4.MinSizeRel ubuntu.clang.python27.release.PyRosetta4.MinSizeRel ubuntu.clang.python36.release.PyRosetta4.MinSizeRel ubuntu.clang.python37.release.PyRosetta4.MinSizeRel ubuntu.clang.python38.release.PyRosetta4.MinSizeRel ubuntu.clang.python39.release.PyRosetta4.MinSizeRel linux.clang.python27.release.PyRosetta4.Release linux.clang.python36.release.PyRosetta4.Release linux.clang.python37.release.PyRosetta4.Release linux.clang.python38.release.PyRosetta4.Release linux.clang.python39.release.PyRosetta4.Release ubuntu.clang.python27.release.PyRosetta4.Release ubuntu.clang.python36.release.PyRosetta4.Release ubuntu.clang.python37.release.PyRosetta4.Release ubuntu.clang.python38.release.PyRosetta4.Release ubuntu.clang.python39.release.PyRosetta4.Release release.PyRosetta4.conda.Release release.source scientific.sb_score12_docking linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify unit.addsan linux.clang.unit.release linux.gcc.unit.release mac.clang.unit.release ubuntu-20.04.gcc.unit.ubsan ubuntu.gcc.unit.ubsan gcc-10.gcc.unit gcc-9.gcc.unit util.apps windows.build.debug windows.build.release

Merge pull request #5463 from RosettaCommons/roccomoretti/fix_test_residue_summary_metric Fix test_residue_summary_metric for individual running. The SimpleMetricTests:test_residue_summary_metric was relying on other test functions in the class for setting up the pose. While this happened to work for Suite running, if you ran just the single test, then it failed. Adjust it to properly set up the pose, independent of the other tests in the class.

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Test: ubuntu.gcc.integration.addsan

Failed sub-tests (click for more details):
dgdp
Test: linux.clang.integration.release_debug_no_symbols

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dgdp
Test: linux.clang.integration.tutorials

Failed sub-tests (click for more details):
Protein-Protein-Docking
Test: ubuntu.gcc.integration.ubsan

Failed sub-tests (click for more details):
dgdp
Test: mac.clang.python39.integration

Failed sub-tests (click for more details):
dgdp
Test: linux.clang.scientific.sb_score12_docking

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Test: ubuntu-20.04.gcc.unit.ubsan

Failed sub-tests (click for more details):
core:AACompositionEnergyTests_packer:test_energy_annealing core:AARepeatEnergyTests:test_energy_annealing core:AARepeatEnergyTests:test_energy_cases core:AARepeatEnergyTests:test_energy_eval core:ApproximateBuriedUnsatPenaltyTests:test_burial_sanity_check core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_packing_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_packing_4SER core:ApproximateBuriedUnsatPenaltyTests:test_packing_APA core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_packing_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_packing_IGReweight core:ApproximateBuriedUnsatPenaltyTests:test_packing_natural_corrections1_cross_chain_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_packing_thr_ser_to_bb_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET core:ApproximateBuriedUnsatPenaltyTests:test_scoring_1ARG_bbMET_O core:ApproximateBuriedUnsatPenaltyTests:test_scoring_4SER core:ApproximateBuriedUnsatPenaltyTests:test_scoring_APA core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_asn core:ApproximateBuriedUnsatPenaltyTests:test_scoring_C3_super_NN core:ApproximateBuriedUnsatPenaltyTests:test_scoring_natural_corrections1_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_proline_nh_test core:ApproximateBuriedUnsatPenaltyTests:test_scoring_thr_ser_to_bb_test core:BuriedUnsatPenaltyGraphSymmetricTests:test_graph_setup core:BuriedUnsatPenaltyGraphSymmetricTests:test_smallpose_graph_setup core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring core:BuriedUnsatPenaltySymmetricTests:test_simple_symmetric_scoring2 core:BuriedUnsatPenaltySymmetricTests:test_symmetric_packing core:BuriedUnsatPenaltySymmetricTests:test_symmetric_setup_for_packing core:BuriedUnsatPenaltyTests:test_packing core:BuriedUnsatPenaltyTests:test_packing_steps core:BuriedUnsatPenaltyTests:test_setup_for_packing core:BuriedUnsatPenaltyTests:test_simple_scoring core:DunbrackEnergyTests:test_dunbrack_cart_deriv_check_partial_flexibility core:DunbrackEnergyTests:test_dunbrack_deriv_check_full_flexibility core:DunbrackEnergyTests:test_dunbrack_deriv_check_partial_flexibility core:DunbrackEnergyTests:test_dunbrack_symm_cart_deriv_check_partial_flexibility core:DunbrackEnergyTests:test_get_bb_bins_range core:DunbrackEnergyTests:test_get_dof_deriv_atoms core:DunbrackEnergyTests:test_peptoid_energy_snap core:EtableEnergyTests:test_default_enmethopts_signal_analytic_etable core:EtableEnergyTests:test_etab_numeric_deriv_check_analytic_version core:EtableEnergyTests:test_etab_numeric_deriv_check_table_version core:EtableEnergyTests:test_etable_cart_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_analytic_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_full_bb_flex_analytic_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_full_bb_flex_table_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_analytic_version core:EtableEnergyTests:test_etable_derivatives_w_autoupdate_intraresidue_terms_and_partial_bb_flex_table_version core:EtableEnergyTests:test_etable_symm_cart_derivatives_w_intraresidue_terms_and_partial_bb_flex_analytic_version core:EtableEnergyTests:test_etrable_trie_vs_trie core:EtableEnergyTests:test_eval_intra_residue_energy_w_minimization_data_analytic_version core:EtableEnergyTests:test_eval_intra_residue_energy_w_minimization_data_table_version core:EtableEnergyTests:test_eval_residue_pair_energy_analytic_version core:EtableEnergyTests:test_eval_residue_pair_energy_table_version core:EtableEnergyTests:test_eval_residue_pair_energy_w_minimization_data core:EtableEnergyTests:test_retrieve_etables_from_scoring_manager core:EtableEnergyTests:test_serialize_etable_trie core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate2_analytic_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate2_table_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_full_bb_flexibility_analytic_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_full_bb_flexibility_table_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_partial_bb_flexibility_analytic_version core:EtableEnergyTests:test_setup_for_minimizing_with_autoupdate_w_partial_bb_flexibility_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_and_intraresidue_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_and_intraresidue_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_full_bbflex_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_and_intraresidue_analytic_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_and_intraresidue_table_version core:EtableEnergyTests:test_start_func_matches_start_score_w_partial_bbflex_table_version core:FiberDiffractionEnergyTest:test_FiberDiffractionEnergy core:FoldTreeSketch:test_cycle_removal core:FoldTreeSketch:test_one_jump_res_sketch core:FoldTreeSketch:test_simple_res_sketch core:HBNetEnergyTests:test_basic_and_symmetric_scoring core:HBNetEnergyTests:test_linear_scoring core:HBNetEnergyTests:test_log_scoring core:HBNetEnergyTests:test_max_network_size core:HBNetEnergyTests:test_quadratic_scoring core:HBNetEnergyTests:test_sqrt_scoring core:HBondEnergyTests:test_hbond_shift_hbond_energy_functionality core:HBondEnergyTests:test_hbonds_deriv_check_w_full_torsional_flexibility core:HBondEnergyTests:test_hbonds_deriv_check_w_partial_torsional_flexibility core:HBondEnergyTests:test_hbonds_trie_vs_trie_no_bbsc_exclusion core:HBondEnergyTests:test_hbonds_trie_vs_trie_sp2 core:HBondEnergyTests:test_hbonds_trie_vs_trie_standard core:HBondEnergyTests:test_hbonds_w_excluded_bb_sc_interactions core:HBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_full_torsional_flexibility core:HBondEnergyTests:test_hbonds_w_sp2term_deriv_check_w_partial_torsional_flexibility core:HBondGraphUtilTests:test_graph_completeness core:HPatchInteractionGraphTests:test_bg_node_2_resid core:HPatchInteractionGraphTests:test_calculate_alt_state_hpatch_score core:HPatchInteractionGraphTests:test_commit_substitution core:HPatchInteractionGraphTests:test_consider_substitution core:HPatchInteractionGraphTests:test_curr_state_exp_hphobes core:HPatchInteractionGraphTests:test_curr_state_hphobes core:HPatchInteractionGraphTests:test_get_energy_current_state_assignment core:HPatchInteractionGraphTests:test_graph_initialization core:HPatchInteractionGraphTests:test_partial_redesign_using_linmem_ig core:HPatchInteractionGraphTests:test_partial_redesign_using_pd_ig core:LinMemInteractionGraphTests:test_linmem_ig core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_caching core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_chainbreak core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_external core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_matrix_scoring core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_overhangs_multichain core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_packer core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_sym core:MHCEpitopeEnergyTests_Scoring:test_mhc_energy_uaa core:MirrorSymmetricConformationTests:test_aacomp core:MirrorSymmetricConformationTests:test_aacomp_design_subset core:MirrorSymmetricConformationTests:test_symmetric_conformation core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_dense_npdhb_ig core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_linmem_npdhb_ig core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_standard_npdhb_ig core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_w_bgnode_linmem_npdhb_ig_acc_network core:NPDHBondInteractionGraphTests:test_create_overcommitted_hbond_networks_w_bgnode_linmem_npdhb_ig_don_network core:NeighborhoodResidueSelectorTests:test_NeighbohoodResidueSelector_fail_no_focus core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_code_level_acces core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_dont_include_focus_close core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_dont_include_focus_far core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_parse_my_tag_selector core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_parse_my_tag_str core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_uninitialized_pose core:NeighborhoodResidueSelectorTests:test_NeighborhoodResidueSelector_use_last_provided_source_of_focus core:NetChargeEnergyTests_packer:test_energy_annealing core:NetChargeEnergyTests_packer_symm:test_energy_annealing_symmetric core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_automatic_symmetry_deduction core:PCSDataSymmetryTests:test_PCSData_score_calculation_all_tags_manual_symmetry_handling core:PCSSingleSetSymmetryTests:test_calc_tensor_and_score_nls_automatic_symmetry_deduction 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core:ResiduePropertiesTests:test_property_enums core:ResiduePropertiesTests:test_variant_types core:ResidueTypeLinkingConstraintTests:test_constraints core:ResidueTypeLinkingConstraintTests:test_linked_identity_constraints core:ResidueTypeLinkingConstraintTests:test_map_constraints core:ResidueTypeLinkingConstraintTests:test_residue_type_linking_constraints_mod_bonus_map core:ResidueTypeLinkingConstraintTests:test_residue_type_linking_constraints_setters core:ResidueTypeLinkingConstraintTests:test_serialize_ResidueTypeLinkingConstraint core:SapConstraintEnergyTests:test_fast_partial_packing core:SapConstraintEnergyTests:test_helper_lightning core:SapConstraintEnergyTests:test_lightning_packing_partial core:SapConstraintEnergyTests:test_math_mover core:SapConstraintEnergyTests:test_mover core:SapConstraintEnergyTests:test_partial_packing core:SapConstraintEnergyTests:test_selectors core:SequenceSymmetricAnnealerTests:test_chain_similarity_after_packing core:SequenceSymmetricAnnealerTests:test_chain_similarity_with_virtual_root core:SequenceSymmetricAnnealerTests:test_chain_similiarity_with_alternative_logic core:SequenceSymmetricAnnealerTests:test_different_accepted_restypes_for_linked_residues core:SequenceSymmetricAnnealerTests:test_fail_in_packing_from_no_common_res_types core:SequenceSymmetricAnnealerTests:test_index_residue_selectors core:SequenceSymmetricAnnealerTests:test_initialise_annealer_from_xml core:SequenceSymmetricAnnealerTests:test_overlapping_index_residue_selectors core:SequenceSymmetricAnnealerTests:test_recover_symmetry core:SequenceSymmetricAnnealerTests:test_xml_validation core:SurfaceInteractionGraphTests:test_bg_node_2_resid core:SurfaceInteractionGraphTests:test_blanket_reset_alt_state_counts core:SurfaceInteractionGraphTests:test_commit_substitution core:SurfaceInteractionGraphTests:test_consider_substitution core:SurfaceInteractionGraphTests:test_get_energy_current_state_assignment core:SymmLinMemInteractionGraphTests:test_sym_linmem_ig_with_asu_in_middle core:SymmLinMemInteractionGraphTests:test_symm_minimalist_ig core:SymmMinimalistInteractionGraphTests:test_symm_minimalist_ig core:SymmetricConformationTests:test_symmetric_conformation core:SymmetricMinimizerTests:test_c2_symm_score core:SymmetricMinimizerTests:test_c3_symm_score core:SymmetricMinimizerTests:test_cs_symm_score core:SymmetricMinimizerTests:test_fibril_symm_score core:SymmetricRotamerTrials:test_symmetric_rotamer_trials core:SymmetricScoreTest:test_SymmetricScoreTest core:Symmetric_Binary_Protein_Silent_File_Tests:test_save_and_restore core:SymmetryUtilTests:test_make_score_function_consistent core:SymmetryUtilTests:test_symmetrize_fold_tree core:TestAsymmetricUnitSelector:test_select_master_subunit_selector core:VoidsPenaltyEnergyTests:test_packing_success core:VoidsPenaltyEnergyTests_symm:test_packing_success devel:FoldabilityFilterTests:test_foldability 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protocols:DdgFilter:test_filter_parsing protocols:DdgFilter:test_use_filter protocols:EnvironmentJump:test_cache_persistence protocols:EnvironmentJump:test_cut_inheritance protocols:EnvironmentJump:test_jump_moves protocols:EnvironmentJump:test_pdb_info_persistence protocols:EnvironmentTorsion:test_dual_environment protocols:EnvironmentTorsion:test_empty_environment protocols:EnvironmentTorsion:test_single_phi_moves protocols:EnvironmentTorsion:test_torsion_can_exclusive_compatibility protocols:EnvironmentTorsion:test_torsion_init protocols:EnvironmentTorsion:test_torsion_must_can_coexist protocols:EnvironmentTorsion:test_torsion_must_exclusive_incompatibility protocols:FoldArchitectMoverTests:test_design protocols:FoldArchitectMoverTests:test_symmetry protocols:FragmentCMTest:test_fragment_insertion protocols:FragmentCMTest:test_xml protocols:GenerateMainchainPotentialTests:test_full_run_ALA protocols:GenerateMainchainPotentialTests:test_full_run_B3N protocols:GenerateMainchainPotentialTests:test_full_run_GLY_asymm protocols:GenerateMainchainPotentialTests:test_full_run_GLY_symm protocols:GenerateMainchainPotentialTests:test_full_run_VAL protocols:GenerateMainchainPotentialTests:test_full_run_VAL_prepro protocols:GenerateMainchainPotentialTests:test_pose_generation protocols:GenerateMainchainPotentialTests:test_pose_generation_prepro protocols:GraftSwitchMoverTests:test_graft_switch_mover_setup protocols:GraftingTest:test_graft_classes protocols:GraftingTest:test_utility_functions protocols:GreedyOptMutationMoverTests:test_GreedyOptMutationMover_ultrasimple protocols:GreenPackerTests:test_GreenPacker_ultrasimple protocols:HBNetMoverTests:test_hbnet_mover_setup protocols:MSDMoverTest:test_correct_constraints protocols:MSDMoverTest:test_keeps_constraints protocols:MSDMoverTest:test_resfile_parsing protocols:MonteCarloTests:test_interface_mc protocols:MonteCarloTests:test_vanilla_mc protocols:MoverJobTests:test_basic_mover_job protocols:MoverJobTests:test_seq_mover_job protocols:NubInitioMoverTests:test_name protocols:NubInitioMoverTests:test_one_motif protocols:NubInitioMoverTests:test_two_motifs protocols:OptimizeMembranePositionMoverTest:test_default_constructor protocols:OptimizeMembranePositionMoverTest:test_parse_my_tag_input protocols:PackDaemonTest:test_DenseIGRepacker_create_dense_ig protocols:PackDaemonTest:test_DoubleDenseIGRepacker_create_double_dense_ig protocols:PackDaemonTest:test_daemon_set_setup protocols:PackDaemonTest:test_pack_daemon_ctor protocols:PackDaemonTest:test_pack_daemon_repack protocols:PointMutScanDriverTests:test_calculate_neighbor_table protocols:PointMutScanDriverTests:test_fill_mutations_list protocols:PointMutScanDriverTests:test_fill_mutations_list_double_mutant_scan protocols:PointMutScanDriverTests:test_fill_mutations_list_single_mutant_scan protocols:PointMutScanDriverTests:test_make_specific_mutant protocols:PointMutScanDriverTests:test_make_specific_mutant_insertion_code protocols:PoseManipulationTests:test_linear_rigid_body_moves protocols:PoseManipulationTests:test_repack_functions protocols:PoseManipulationTests:test_rotation_rigid_body_moves protocols:ProtectedConf:test_replace_residue protocols:ProteinProteinInterfaceUpweighterTests:test_packing_4SER protocols:PruneBuriedUnsatsOperationTests:test_burial_sanity_check protocols:PruneBuriedUnsatsOperationTests:test_pruning_arg_and_two_ser protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_bb protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_satisfied_bb protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_satisfied_ser protocols:PruneBuriedUnsatsOperationTests:test_pruning_asn_to_ser protocols:PseudocontactShiftTests:test_eval_abinitio_pcs_only protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_abinitio_output protocols:PseudocontactShiftTests:test_eval_pcs_energy_on_native protocols:RNA_DeNovoOptimizerTest:test_sarcin_ricin_loop_buildup protocols:RNA_DeNovoProtocolTest:test_save_times_option protocols:RigidChunkTest:test_apply_to_template protocols:RigidChunkTest:test_chunk protocols:RigidChunkTest:test_two_chunk protocols:RigidChunkTest:test_two_part_chunk protocols:RosettaScriptsParserTests:test_all_attributes_in_xsd_have_descriptions protocols:RosettaScriptsParserTests:test_allowed_multiple_dependencies protocols:RosettaScriptsParserTests:test_multiple_includes protocols:RosettaScriptsParserTests:test_output_scoring protocols:RosettaScriptsParserTests:test_prohibit_circular_dependencies protocols:RosettaScriptsParserTests:test_report_at_end protocols:SimpleThreadingMoverTests:test_basic_class protocols:SymmetricAddMembraneMoverTest:test_appropriate_foldtree protocols:SymmetricAddMembraneMoverTest:test_membrane_jump_tracking protocols:SymmetricAddMembraneMoverTest:test_preserved_symmetry protocols:SymmetricAddMembraneMoverTest:test_symm_add_postconditions protocols:TaskAwareMinMoverTests:test_TaskAwareMinMover protocols:ddG:test_chains_to_move_invert protocols:ddG:test_filter_parsing_dimer protocols:ddG:test_filter_parsing_monomer protocols:ddG:test_use_filter_dimer protocols:ddG:test_use_filter_monomer