Merge pull request #736 from RosettaCommons/antibody
Adding antibody/grafting which is a C++ port of antibody.py script. Right now the following parts is ported/implemented:
- regex-based CDR detection
- Chothia Numberer
- SCS with NCBI B+ template selection implementation
- some grafting code
Also: fixes to CSI code (proper detection of TTY) and various other small fixes.