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Revisions №57828

branch: master 「№57828」
Commited by: kwikwag
GitHub commit link: 「b67378c9a1c38c87」 「№383」
Difference from previous tested commit:  code diff
Commit date: 2015-05-05 03:02:21

Merge pull request #383 from RosettaCommons/kwikwag/peptiderive-talaris Peptiderive: merge second round of fixes to the PeptiDerive protocol and adjacent logic. Note that this includes some fixes to pose::util and to unit testing infrastructure. Detailed change list below. DisulfideInsertionMover - unit tests - RosettaScripts support PeptideDeriverFilter unit tests - use -in:missing_density_to_jump 1 - change input PDB to check more edge cases: discontinuous chains, short segments, and zero-isc segments. Bug fixes in basic Rosetta code - fix `return_nearest_residue()` and `addVirtualResAsRoot()` in pose::util - fix test core files to reuse `get_commandline_with_additional_options()` and always use `initialize_rng()` Logic fixes - anchor residue in the receptor for receptor-peptide jump is now nearest residue to the peptide - make jump id is returned from `build_receptor_peptide_pose()` (as it changes when using `-in:missing_density_to_jump 1`) - fix #371 : remove truncated terminus variant type before adding full terminus variant type - use iterators for the `next_cutpoint` logic; this fixed some logic flaws - fix incorrect pose PDB being output as best linear - change translation magnitude to 2e6 Option tune-ups - compressed report output (`report_gzip` option) - output PDBs by default

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