Merge pull request #159 from RosettaCommons/daslab
Daslab -- score function updates
All test changes are cosmetic (due to changes in EnergyMethodOptions output or ScoreType order) except:
cs_rosetta_rna
fix to intra_RNA terms
ddG_ensemble, ddG_of_mutation, enzdes
ligand_*, sdf_reader, UBQ_E2_thioester
floating point deviations (note that ligand integration tests that use the PDB 7cpa change the last digit of some hydrogen)
rosetta_scripts_hbond_options -- is this being maintained? test was broken previously
all swa_rna tests
The changes here are due to an update of rna_bulge to be computed over non-instantiated residues, and turning off of 2'-OH virtualization.
vip
@bborgo, @havranek
there was a mistake in how ref weights was being set by ScoreFunction before -- now fixed, but this changes the integration test...