Merge pull request #88 from RosettaCommons/vmullig/fix_master_malarkey
This reinstates the merge of vmullig/cycpep with master.
This merge does the following:
--Updates GeneralizedKIC with new features (making it match the documented features in the help wiki).
--Brings in some tweaks to BBG that Yuan made to make BBG work with GenKIC.
--Makes one small tweak to random phi/psi generation in Rama to restore functionality for D-amino acids.
--Adds a unit test for GeneralizedKIC (important prior to the owning pointer switchover!)
Test failures:
--cxx11 tests (expected to fail)
--a few integration tests that were already failing to run