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Revisions №20200

branch: commits 「№20200」
Commited by: MoritzErtelt
GitHub Pull Request link: 「№6439」
Merge: 「76e2f63f7」← 「ce053c57b」  code diff
Scheduled at: 2023-09-17 09:48:29.071662
linux.clang linux.gcc linux.srlz mac.clang
debug
release
unit
linux.clang.cxx11thread.serialization.python37.PyRosetta.unit mac.clang.python38.PyRosetta.unit mpi mpi.serialization build.header build.levels build.ninja_debug beautification code_quality.cppcheck code_quality.merge_size serialization code_quality.submodule_regression integration.mpi integration.release_debug integration.tensorflow integration.thread integration performance profile linux.clang.score linux.gcc.score mac.clang.score linux.scripts.pyrosetta scripts.rosetta.parse scripts.rosetta.validate scripts.rosetta.verify util.apps windows.build.debug windows.build.release

Pull Request №6439 master←moritzertelt/sample_seq_from_probs Merge: 76e2f63f750b32d50338385a5e1d99ecb36da226←ce053c57b6bb2ff7a91ddbe4f134317f0b01ec06 Add support for saving, loading and using PerResidueProbabilities for design ---------------- Merge commit message: beautify

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Test: mac.clang.python38.PyRosetta.unit

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Test: mac.clang.build.debug

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Test: mac.clang.build.release

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Test: linux.clang.integration.release_debug_no_symbols

Failed sub-tests (click for more details):
AddConstraintsToCurrentConformationMover AlignPDBInfoToSequences BFactorSelector ConsensusLoopDesign ContactMolecularSurface DumpTrajectoryEnergy DumpTrajectoryEnergy_packing Enzrevert_xml FavorSequenceProfileMover FilterReportAsPoseExtraScoresMover FlipChirality HelixBendFilter InterfaceAnalyzer InterfaceDdG LayerDesign LayerDesign_symm LayerSelector LoopAnalyzer LoopLengthChange ModifyVariantTypeMover MutateResidue_selector OversaturatedHbondAcceptorFilter PeptideCyclizeMover PeptideStubMover_prependRepeat PolarDesign2019 RBOut ReadResfile_with_selector RunSimpleMetric_b_factor_test SSElementSelector SecondaryStructureFilter StrandCurvatureByLevels StrandHelixGeometryFilter TryDisulfPermutations UnsatSelector add_constraints_to_current_conformation add_helix_sequence_constraints add_helix_sequence_constraints_advanced_setup add_job_pair_data antibody_designer_xml autosetup_metals_centroid backbonegridsampler backbonegridsampler_multiresidue backbonegridsampler_nstruct_mode backrub backrub_interface_ddG balancedKIC bin_initialization bin_perturbation binselector binselector_probins bundlegridsampler bundlegridsampler_composition_energy bundlegridsampler_composition_energy_fract_range bundlegridsampler_copy_pitch bundlegridsampler_design bundlegridsampler_design_nstruct_mode bundlegridsampler_epsilon bundlegridsampler_multirepeat bundlegridsampler_z0_offset bundlegridsampler_z1_offset bundlereporter_filter buried_area_filter buried_unsat_voids_hbnet_design buried_unsat_voids_hbnet_design_symm cart_min_glycans ccd_ends_graft_mover_rs centroid_from_fullatom cleanAlignment coarse_rna_scoring composition_energy_layers constraints_metric control_flow_rs copy_rotamer_mover crankshaft_flip create_sequence_motif crosslinkermover_1_4_bbmb_asymm crosslinkermover_1_4_bbmb_c2_symmetry crosslinkermover_1_4_bbmb_s2_symm crosslinkermover_octahedral crosslinkermover_octahedral_s2_symm crosslinkermover_square_planar crosslinkermover_square_planar_d2_symm crosslinkermover_square_pyramidal crosslinkermover_tetrahedral_metal crosslinkermover_tetrahedral_metal_asp crosslinkermover_tetrahedral_metal_c2_symmetry crosslinkermover_tetrahedral_metal_d2_symmetry crosslinkermover_thioether crosslinkermover_tma crosslinkermover_tma_symm crosslinkermover_trigonal_planar crosslinkermover_trigonal_planar_c3_symm crosslinkermover_trigonal_pyramidal crosslinkermover_trigonal_pyramidal_c3_symm cst_info custom_basetype_packer_palette cycpep_design_pipeline cycpep_rdkit_metric cycpep_rigid_body_permutation_mover cycpep_symmetry_filter d_workflow database_session_resource ddG_scan ddG_sym design_w_custom_palette-CAAs design_w_custom_palette-NCAAs design_w_custom_palette-RNA disulfidize_beta_cys dna_interface_design dock_with_hotspot_place_simultaneously energy_based_clustering_alpha_aa_scorefile enumerative_sampling enzscore_filter_dimetal enzscore_filter_dimetal_sym enzscore_filter_ligand enzscore_filter_metal enzscore_filter_metal_sym evolution exclusively_shared_jumps farnesyl fast_relax_scripts favor_coupling_tensor favor_native_residue features features_parallel features_pdb fold_from_loops fuzzy ga_ligand_dock ga_ligand_dock_amino_acid ga_ligand_dock_macrocycle genkic_bin_perturbing genkic_bin_sampling genkic_bin_setting genkic_dihedral_copying genkic_lowmemory_mode genkic_rama_filter genkic_ramaprepro_sampling genkic_sugars glycan_anomers glycan_refinment glycan_sequon_scanner glycan_tree_relax grid_scores_features hbnet hbnet_asymm hbnet_energy hbnet_energy_rosettascripts_linear hbnet_energy_symm hbnet_use_input_rot hbondstoresidue_selector helical_bundle helical_bundle_nonideal homodimer_fnd_ref2015_memb hotspot_graft hts_io hybridization interaction_graph_summary_metric job_definition_script_vars kinemage_grid_output ligand_database_io ligand_dock_cholesterol ligand_dock_ensemble ligand_dock_grid ligand_dock_script ligand_motif_design ligand_water_docking longest_continuous_polar_segment_filter loop_creation loop_grower_N_term_symm make_and_perturb_bundle_multirepeat make_symmdef_file match_xml metropolis_hastings mf_fixbb_des mf_fixbb_sc mf_flexbb_sc mhc_epitope mhc_epitope_nmer_preload minimize_with_elec_dens mirror_symm motif_score_filter mp_ligand_interface mp_quick_relax_ref2015_memb mp_relax mp_span_ang_ref2015_memb mp_symmetry_load multistage_rosetta_scripts multistage_rosetta_scripts_clustering netcharge_design netcharge_design_symm nonideal_rtmin oligourea_design output_schema pertmin perturb_helical_bundle perturb_helical_bundle_copying_pitch perturb_helical_bundle_epsilon perturb_helical_bundle_setting perturb_helical_bundle_z_offset phiselector place_simultaneously pna_base_pairs pose_sewing posttranslationalmod_io ppi_v3_suiteA ppi_v3_suiteB ppi_v3_suiteC ppi_v3_suiteD ppi_v3_suiteE ppi_v3_suiteF ppi_v3_suiteG ppk protocol_metric rama_mutation_selector rdkit_metrics real_virt_mover recon_design referencepose_mutateresidue remodel_disulfides_rosettascripts remodel_helical_repeat repack_with_elec_dens repeat_propagate repeat_propagate_v2 repeat_propagate_v3 repeat_relax res_lipo_ref2015_memb resource_database_locator rnp_ddg_finalize rollmover rosetta_scripts_hbond_options rosetta_scripts_include rosetta_scripts_jd3 rosetta_scripts_loops rosetta_scripts_setup rosie_ligand_docking rotamer_probability rs_flexbbmoves rs_loophash sample_seq_from_probs sasa_metric_options score12_docking score_only_silence sdf_reader secondary_structure_output selected_residue_count_metric sequence_profile_constraints set_torsion simple_glycosylation simple_glycosylation_alternate_AAs simple_grafting_movers simple_hbondstoatom simple_metric_cache simple_metric_features simple_metric_filter simple_metrics simple_metrics_in_protocols simple_metrics_per_residue small_molecule_lattice_dock smallmover_resselector splice_in_4loops_longer splice_in_4loops_shorter splice_out_H1_H2_longer splice_out_H1_H2_same splice_out_H1_H2_shorter splice_out_H3_longer splice_out_H3_same splice_out_H3_shorter splice_out_L1_L2_longer splice_out_L1_L2_same splice_out_L1_L2_shorter splice_out_L3_longer splice_out_L3_same splice_out_L3_shorter startfrom_file stored_residue_subset swm_add_rosettascripts symm_disulfidize symm_rotamer_boltzmann symmetric_cycpep_align_and_symmetrize symmetrical_residue_selector symmetry_data_resource target_clash task_selector test_degreaser threefold_symm_peptide_design threefoldlinkermover_tbmb threefoldlinkermover_tbmb_symmetric tna_base_pairs voids_penalty_energy_design voids_penalty_energy_design_symmetry write_mol_file
Test: mac.clang.python39.integration

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Test: mac.clang.score

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Test: linux.clang.scripts.rosetta.parse

Failed sub-tests (click for more details):
pilot.cyclic_peptide_design.cis_peptide_design_backbone_generation.KIC pilot.enzymedesign.design_threading.relax_deimm_designs pilot.metal_binding.zinc_dependent_hydrolase.05_symmetrize_matcheZn_rb_min pilot.metal_binding.zinc_dependent_hydrolase.05_symmetrize_matchechi_min_match pilot.metal_binding.zinc_dependent_hydrolase.15_relax_w_zadd_zn pilot.protein_binding_energy_estimation.h3h4_designs.fastrelax3x_h3h4_fullrelax pilot.protein_design.backrub_disulfidize_monte_carlo.backrub_disulfidize_monte_carlo pilot.protein_design.de_novo_heterodimers.heterodimer_LSAS_final_design_close_loops_only pilot.protein_design.scotts_scripts.invrot_rem_itest pilot.protein_design.scotts_scripts.mutate_minimize_w_cst pilot.protein_interface_design.edge_strand_mediated_interface_design.multidomain_1_bpb pilot.protein_interface_design.edge_strand_mediated_interface_design.multidomain_1_sel_bpb pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_ba.bp_pass__20161129210609.pdb.bp_20161219173455_0001_0002_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210228.pdb.bp_20161219172446_0001_0001_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210254.pdb.bp_20161219172548_0001_0003_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_extend_cter_bpb pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_motif15aa_l3_off-1_rosman_2kpo_renumber pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_bulge_processed_renumber pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_large_sheet_bulge_bulge_processed_renumber pilot.protein_interface_design.edge_strand_mediated_interface_design.rif_rifdock_HHHscafs_sel_designs_bpb pilot.scoring.fast_relax_and_score.fast_relax_and_score pilot.symmetry.symm public.analysis.interface.analyze_electrostatics_in_helix_trimer public.analysis.interface.custom_interface_filter1 public.analysis.interface.delete_chain_then_interface_analyzer public.docking.terpeneSynthase_docking public.docking.terrible_analyze_mutations_at_interface public.enzymedesign.enzdes_bookchapter_example public.enzymedesign.proenzyme_design.cpg2_proenzyme_disulfidize public.enzymedesign.proenzyme_design.cpg2_proenzyme_dock_and_design_helix public.enzymedesign.proenzyme_design.cpg2_proenzyme_interface_saltbridges public.enzymedesign.proenzyme_design.cpg2_proenzyme_prodomain_energylandscape public.enzymedesign.proenzyme_design.cpg2_proenzyme_repack_matches_after_helix_docking public.homology_modeling.relax_into_density.relax_into_density public.loop_modeling.simple_loop_grower.simple_loop_grower public.point_mutant_scan.point_mutant_scan public.protein_design.deimmunization.mhc_epitope_design public.protein_hacking.helix_extend_with_threading public.protein_hacking.helix_extender public.protein_interface_design.single_sided_dock_design_minimize_interface_protocol.ddmi public.sewing.refinement.HR1B_refinement public.sewing.refinement.HR1B_refinement_remove_partner public.sewing.refinement.refine_C-terminal_binding_helix public.visualize_protocol.template_pymol_mover
Test: linux.clang.scripts.rosetta.validate

Failed sub-tests (click for more details):
pilot.crystal_refine.reciprocal_refinement pilot.cyclic_peptide_design.membrane_permeable_peptide_design.cyclic_aromatic_permeable_design pilot.denovo_smallmolecule_binding_design.beta_barrel_design.hbi_p2_rectBarrel_aacomp pilot.denovo_smallmolecule_binding_design.beta_barrel_design.hbi_p2_rectBarrel_aacomp_releaserif pilot.energy_optimization.rotamer_recovery pilot.example.an_example_for_testing_purposes.example_valid pilot.fold_and_dock_membrane_single_spanning_homodimers.fnd_homo pilot.homology_modeling.hybridize.cm pilot.homology_modeling.hybridize.iterhybrid.cross pilot.homology_modeling.hybridize.iterhybrid.mut pilot.homology_modeling.hybridize.refine.hires pilot.homology_modeling.map_align.PF14912.5 pilot.metal_binding.second_shell_interactions.hbnet pilot.metal_binding.second_shell_interactions.min pilot.metal_binding.zinc_dependent_hydrolase.09_minimize_matcheZn_rb_min pilot.metal_binding.zinc_dependent_hydrolase.10_symmetric_desigsymm_design pilot.metal_binding.zinc_dependent_hydrolase.12_close_looclose_loop pilot.metal_binding.zinc_dependent_hydrolase.12_close_loosymm_design pilot.metal_binding.zinc_dependent_hydrolase.12_close_loosymm_design_after_loop pilot.metal_binding.zinc_dependent_hydrolase.13_design_loosymm_design_loop pilot.metal_binding.zinc_dependent_hydrolase.13_design_loosymm_design_loop_new pilot.metal_binding.zinc_dependent_hydrolase.14_filter_for_holeholes_filter pilot.metal_binding.zinc_dependent_hydrolase.15_relax_w_zZn_rb_min pilot.metal_binding.zinc_dependent_hydrolase.16_design_w_zNCS_design pilot.metal_binding.zinc_dependent_hydrolase.17_NCS_relafrelax pilot.metal_binding.zinc_dependent_hydrolase.17_strong_cst_NCS_relafrelax pilot.metal_binding.zinc_dependent_hydrolase.21_remove_thsymm_design pilot.metal_binding.zinc_dependent_hydrolase.22_design_w_zn_after_thr_removaNCS_design pilot.metal_binding.zinc_dependent_hydrolase.22_design_w_zn_after_thr_removaZn_rb_min pilot.metal_binding.zinc_dependent_hydrolase.30_script_for_HH_blueprinworst9mer_filter pilot.metal_binding.zinc_dependent_hydrolase.35_NCS_design_fragment_flowerNCS_design pilot.metal_binding.zinc_dependent_hydrolase.36_new_scaffolds_from_remodel_filtering_steworst9mer_filter pilot.metal_binding.zinc_dependent_hydrolase.39_alternative_sitZn_cst_score pilot.metal_binding.zinc_dependent_hydrolase.49_filter_parametric_bundleworst9mer_filter pilot.metal_binding.zinc_dependent_hydrolase.55_break_symmetrasymm_design pilot.metal_binding.zinc_dependent_hydrolase.55_break_symmetrhbnet_only pilot.metal_binding.zinc_dependent_hydrolase.working_example.symm_design pilot.mutation_scanning.filterscan_score_all.filterscan-nopssm pilot.mutation_scanning.singlemutation_symrescore.1c_mutalyze pilot.mutation_scanning.singlemutation_symrescore.mutalyze pilot.protein_design.RGD_loop_remodeling.Hyak_scripts_blueprint_builder pilot.protein_design.RGD_loop_remodeling.Hyak_scripts_blueprint_builder_fixed pilot.protein_design.RGD_loop_remodeling.Hyak_scripts_blueprint_builder_unformatted pilot.protein_design.TERM_decoy_design.pose_comp pilot.protein_design.bundle_tools.extend_bundle pilot.protein_design.bundle_tools.graft_bundle_Cterm pilot.protein_design.bundle_tools.graft_bundle_Nterm pilot.protein_design.de_novo_heterodimers.heterodimer_final_design pilot.protein_design.membrane_design.membrane_design pilot.protein_design.membrane_design.membrane_design_3helical_tetramer.design pilot.protein_design.membrane_design.membrane_design_3helical_tetramer.filter pilot.protein_design.pore_design.nov13_mchbnet_extend_hbnet_on_docks pilot.protein_design.pore_design.nov13_mchbnet_extend_hbnet_on_docks_con pilot.protein_design.pore_design.oct19_add_hbnet_designCx_export pilot.protein_design.scotts_scripts.CDB_build_HHH_backbone_disulfides_and_design pilot.protein_design.scotts_scripts.all_interface_filters pilot.protein_design.scotts_scripts.bgs_hbnet_MPM pilot.protein_design.scotts_scripts.c3 pilot.protein_design.scotts_scripts.david_nohbnet pilot.protein_design.scotts_scripts.david_nohbnet_polar_layer pilot.protein_design.scotts_scripts.makePolyAla pilot.protein_design.scotts_scripts.monomer_fil pilot.protein_design.scotts_scripts.packing_filter pilot.protein_design.scotts_scripts.post_hbnet_min_repack_filter pilot.protein_interface_design.design_from_dock.FD_MRM_nobb pilot.protein_interface_design.design_from_dock.FD_MRM_wbb pilot.protein_interface_design.design_from_dock.mc_hbnet_only pilot.protein_interface_design.edge_strand_mediated_interface_design.apical_domain_design pilot.protein_interface_design.edge_strand_mediated_interface_design.multidomain_1_sel_design pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_agba.bp_pass__20161129211044.pdb.bp_20161219173042_0001_0002_option1_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_agba.bp_pass__20161129211044.pdb.bp_20161219173042_0001_0002_option1_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_agba.bp_pass__20161129211044.pdb.bp_20161219173042_0001_0002_option2_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_agba.bp_pass__20161129211044.pdb.bp_20161219173042_0001_0002_selected_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_ba.bp_pass__20161129210609.pdb.bp_20161219173455_0001_0002_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_ba.bp_pass__20161129210609.pdb.bp_20161219173455_0001_0002_selected_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_baab.bp_pass__20161129201410.pdb.bp_20161219173607_0001_0002_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_baab.bp_pass__20161129201410.pdb.bp_20161219173607_0001_0002_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_baab.bp_pass__20161129201410.pdb.bp_20161219173607_0001_0002_selected_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210228.pdb.bp_20161219172446_0001_0001_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210228.pdb.bp_20161219172446_0001_0001_selected_build.bp_pass_20170209105717_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210254.pdb.bp_20161219172548_0001_0003_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210254.pdb.bp_20161219172548_0001_0003_selected_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207201758_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207201811_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207201908_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207202033_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207202741_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207202756_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207203033_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207203228_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172909.pdb.bp_pass_20170207203340_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207200957_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207201053_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207202003_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207202032_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207202829_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207203455_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207203553_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_input2.bp_pass_20170207172929.pdb.bp_pass_20170207203622_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_test_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_designs_c_pass_gba.bp_pass__20161129210726.pdb.bp_20161219173002_0001_0001_selected_test_bpb2_csts pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_add_2nd_helix_back_nobackhelix_yet_cc_scaf_c_II_0001.pdb.bp_pass__20161124211103_0001_0001_1helix_bpb2 pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_cterhelix_different_loop_bpb pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_long_ferrodoxins_like_extend_strand_and_relax_again_bpb pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_long_ferrodoxins_like_extend_strand_and_relax_again_run_jump_PPIdes pilot.protein_interface_design.edge_strand_mediated_interface_design.relaxed_tfr_retry_nonrelaxed_DeNovo_scaffolds_DeNovoStrands_long_ferrodoxins_like_jump_PPIdes pilot.protein_interface_design.edge_strand_mediated_interface_design.rif_rifdock_norif pilot.protein_interface_design.edge_strand_mediated_interface_design.rif_rifdock_ppi_intdes pilot.protein_interface_design.generate_stubs.invrot_E pilot.protein_interface_design.motifgrafting.180212_small_motif public.analysis.interface.custom_interface_filter2 public.docking.ancient_lrf_docking public.docking.lrf_docking_with_autointerfacecst public.docking.lrf_docking_with_usersuppliedconstraints public.enzymedesign.proenzyme_design.abinitio_topbroker public.enzymedesign.proenzyme_design.cpg2_proenzyme_prodomain_fixedbbdesign public.enzymedesign.proenzyme_design.cpg2_proenzyme_prodomain_hbnetdesign public.enzymedesign.proenzyme_design.cpg2_proenzyme_rebuildlinker public.enzymedesign.proenzyme_design.cpg2_proenzyme_small_domain_glu_placestub public.enzymedesign.proenzyme_design_SEWING.cpg2_proenzyme_postsewing public.enzymedesign.proenzyme_design_SEWING.cpg2_proenzyme_sewing public.feature_analysis.hbond_features_from_relaxed_decoys_npdhb_potential.hbond_feature_extraction public.feature_analysis.interface_feature_analysis.interface_features public.homology_modeling.RosettaCM_basic.cm_basic public.homology_modeling.RosettaCM_with_constraints.cm_with_constraints public.homology_modeling.RosettaCM_with_density.cm_with_density public.homology_modeling.hybridize_example public.macrocycle_inhibitor_design.NDM1i-1_design_script.modernized.xml.NDM1i_1_design public.macrocycle_inhibitor_design.NDM1i-3D_biding_mode_comparison_script.xml.minimize_and_score public.macrocycle_inhibitor_design.NDM1i-3_design_script.modernized.xml.NDM1i_3_design public.macrocycle_inhibitor_design.NDM1i-3_design_script.original.xml.NDM1i_3_design_legacy public.macrocycle_inhibitor_design.NDM1i-4_design_script.original.xml.NDM1i_4_design public.macrocycle_inhibitor_design.NDM1i_delta_G_binding_estimation_scripts.original.xml.ddgscript public.point_mutant_scan.point_mutant_scan public.point_mutant_scan.point_mutant_scan.Froning_et_al public.rotamer_recovery.ex1ex2_repack_t4400lt200_betaNov15_npdhb.rotamer_recovery_via_feature_analysis public.sewing.refinement.gaq_binder_refinement public.sewing.refinement.zn_refinement
Test: linux.clang.unit

Failed sub-tests (click for more details):
core:ResiduePropertySelectorTests:test_selector core:ResiduePropertySelectorTests:test_xml_interface core:SimpleMetricSelectorTests:test_selector core:SimpleMetricSelectorTests:test_xml protocols:FoldTreeFromMotifTests:test_fold_tree_from_loops protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_constructor_not_defaults protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_defaults protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_not_defaults protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:RosettaScriptsJobQueenTests:test_read_resources_from_xml_file protocols:RosettaScriptsParserTests:test_output_scoring protocols:RosettaScriptsParserTests:test_report_at_end protocols:SwitchChainOrderMoverTests:test_pdbinfo_labels protocols:XmlObjectsTests:test_file_instantiation protocols:XmlObjectsTests:test_includes protocols:XmlObjectsTests:test_parsed_protocol protocols:XmlObjectsTests:test_static_instantiation_filter protocols:XmlObjectsTests:test_static_instantiation_mover protocols:XmlObjectsTests:test_static_instantiation_residue_selector protocols:XmlObjectsTests:test_static_instantiation_score_function protocols:XmlObjectsTests:test_static_instantiation_simple_metric protocols:XmlObjectsTests:test_static_instantiation_taskop protocols:XmlObjectsTests:test_string_instantiation
Test: linux.gcc.cxx11thread.serialization.unit

Failed sub-tests (click for more details):
core:ResiduePropertySelectorTests:test_selector core:ResiduePropertySelectorTests:test_xml_interface core:SimpleMetricSelectorTests:test_selector core:SimpleMetricSelectorTests:test_xml protocols:FoldTreeFromMotifTests:test_fold_tree_from_loops protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_constructor_not_defaults protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_defaults protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_not_defaults protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:RosettaScriptsJobQueenTests:test_read_resources_from_xml_file protocols:RosettaScriptsParserTests:test_output_scoring protocols:RosettaScriptsParserTests:test_report_at_end protocols:SwitchChainOrderMoverTests:test_pdbinfo_labels protocols:XmlObjectsTests:test_file_instantiation protocols:XmlObjectsTests:test_includes protocols:XmlObjectsTests:test_parsed_protocol protocols:XmlObjectsTests:test_static_instantiation_filter protocols:XmlObjectsTests:test_static_instantiation_mover protocols:XmlObjectsTests:test_static_instantiation_residue_selector protocols:XmlObjectsTests:test_static_instantiation_score_function protocols:XmlObjectsTests:test_static_instantiation_simple_metric protocols:XmlObjectsTests:test_static_instantiation_taskop protocols:XmlObjectsTests:test_string_instantiation
Test: linux.gcc.unit

Failed sub-tests (click for more details):
core:ResiduePropertySelectorTests:test_selector core:ResiduePropertySelectorTests:test_xml_interface core:SimpleMetricSelectorTests:test_selector core:SimpleMetricSelectorTests:test_xml protocols:FoldTreeFromMotifTests:test_fold_tree_from_loops protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_constructor_not_defaults protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_defaults protocols:InterfaceHydrophobicResidueContactsFilterTests:test_InterfaceHydrophobicResidueContactsFilter_from_xml_not_defaults protocols:MRSJobQueenTests:test_MRSJobQueen_with_good_input protocols:MRSJobQueenTests:test_incorrect_attribute_value protocols:MRSJobQueenTests:test_not_enough_job_results_for_next_node protocols:MRSJobQueenTests:test_tag_for_nonmover_nonfilter protocols:MRSJobQueenTests:test_typo_in_score_function protocols:MoverFactoryTests:test_MoverFactory_all_Mover_all_attributes_have_descriptions protocols:MoverFactoryTests:test_MoverFactory_all_Mover_complexTypes_have_descriptions protocols:MoverFactoryTests:test_all_movers_define_valid_xsds protocols:RosettaScriptsJobQueenTests:test_read_resources_from_xml_file protocols:RosettaScriptsParserTests:test_output_scoring protocols:RosettaScriptsParserTests:test_report_at_end protocols:SwitchChainOrderMoverTests:test_pdbinfo_labels protocols:XmlObjectsTests:test_file_instantiation protocols:XmlObjectsTests:test_includes protocols:XmlObjectsTests:test_parsed_protocol protocols:XmlObjectsTests:test_static_instantiation_filter protocols:XmlObjectsTests:test_static_instantiation_mover protocols:XmlObjectsTests:test_static_instantiation_residue_selector protocols:XmlObjectsTests:test_static_instantiation_score_function protocols:XmlObjectsTests:test_static_instantiation_simple_metric protocols:XmlObjectsTests:test_static_instantiation_taskop protocols:XmlObjectsTests:test_string_instantiation
Test: mac.clang.unit

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